Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J9312_RS21560 Genome accession   NZ_CP072845
Coordinates   4032728..4033246 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain XP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4027728..4038246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS21530 (J9312_21390) yyaJ 4028232..4029587 (+) 1356 WP_041337895.1 MFS transporter -
  J9312_RS21535 (J9312_21395) maa 4029621..4030175 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  J9312_RS21540 (J9312_21400) yyaH 4030193..4030573 (-) 381 WP_003244460.1 VOC family protein -
  J9312_RS21545 (J9312_21405) ccpB 4030629..4031564 (-) 936 WP_069964447.1 transcriptional regulator CcpB -
  J9312_RS21550 (J9312_21410) xth 4031624..4032382 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  J9312_RS21555 (J9312_21415) rpsR 4032445..4032684 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  J9312_RS21560 (J9312_21420) ssbA 4032728..4033246 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  J9312_RS21565 (J9312_21425) rpsF 4033287..4033574 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  J9312_RS21570 (J9312_21430) ychF 4033685..4034785 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  J9312_RS21575 (J9312_21435) yyaE 4034912..4036915 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  J9312_RS21580 (J9312_21440) yyzM 4036966..4037172 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=556240 J9312_RS21560 WP_003219228.1 4032728..4033246(-) (ssbA) [Bacillus subtilis strain XP]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=556240 J9312_RS21560 WP_003219228.1 4032728..4033246(-) (ssbA) [Bacillus subtilis strain XP]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378