Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J9B93_RS11770 Genome accession   NZ_CP072843
Coordinates   2457542..2457979 (-) Length   145 a.a.
NCBI ID   WP_095318402.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2452542..2462979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS11720 (J9B93_11720) sinI 2452927..2453100 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  J9B93_RS11725 (J9B93_11725) sinR 2453134..2453469 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  J9B93_RS11730 (J9B93_11730) tasA 2453517..2454302 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  J9B93_RS11735 (J9B93_11735) sipW 2454366..2454950 (-) 585 WP_012117977.1 signal peptidase I SipW -
  J9B93_RS11740 (J9B93_11740) tapA 2454922..2455593 (-) 672 WP_063174755.1 amyloid fiber anchoring/assembly protein TapA -
  J9B93_RS11745 (J9B93_11745) - 2455852..2456181 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  J9B93_RS11750 (J9B93_11750) - 2456221..2456400 (-) 180 WP_003153093.1 YqzE family protein -
  J9B93_RS11755 (J9B93_11755) comGG 2456457..2456834 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  J9B93_RS11760 (J9B93_11760) comGF 2456835..2457230 (-) 396 WP_095318401.1 competence type IV pilus minor pilin ComGF -
  J9B93_RS11765 (J9B93_11765) comGE 2457244..2457558 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  J9B93_RS11770 (J9B93_11770) comGD 2457542..2457979 (-) 438 WP_095318402.1 competence type IV pilus minor pilin ComGD Machinery gene
  J9B93_RS11775 (J9B93_11775) comGC 2457969..2458235 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  J9B93_RS11780 (J9B93_11780) comGB 2458282..2459319 (-) 1038 WP_095318403.1 competence type IV pilus assembly protein ComGB Machinery gene
  J9B93_RS11785 (J9B93_11785) comGA 2459306..2460376 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  J9B93_RS11790 (J9B93_11790) - 2460568..2461518 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -
  J9B93_RS11795 (J9B93_11795) - 2461664..2462965 (+) 1302 WP_014305416.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16298.87 Da        Isoelectric Point: 10.3354

>NTDB_id=556109 J9B93_RS11770 WP_095318402.1 2457542..2457979(-) (comGD) [Bacillus velezensis strain VY03]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTMVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=556109 J9B93_RS11770 WP_095318402.1 2457542..2457979(-) (comGD) [Bacillus velezensis strain VY03]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGATGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTTGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

55.479

100

0.559