Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J9174_RS12145 Genome accession   NZ_CP072837
Coordinates   2345592..2346110 (-) Length   172 a.a.
NCBI ID   WP_086043613.1    Uniprot ID   A0A1W7AER1
Organism   Macrococcoides canis strain 19/EPI0118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2340592..2351110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9174_RS12120 (J9174_12120) - 2341140..2342120 (+) 981 WP_164942949.1 DUF2382 domain-containing protein -
  J9174_RS12125 (J9174_12125) - 2342223..2342837 (+) 615 WP_210152324.1 GNAT family N-acetyltransferase -
  J9174_RS12130 (J9174_12130) - 2342834..2343391 (-) 558 WP_210152325.1 YfbU family protein -
  J9174_RS12135 (J9174_12135) - 2343812..2345011 (-) 1200 WP_302054263.1 IS110 family transposase -
  J9174_RS12140 (J9174_12140) rpsR 2345317..2345559 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  J9174_RS12145 (J9174_12145) ssbA 2345592..2346110 (-) 519 WP_086043613.1 single-stranded DNA-binding protein Machinery gene
  J9174_RS12150 (J9174_12150) rpsF 2346135..2346425 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  J9174_RS12155 (J9174_12155) ychF 2346902..2348002 (-) 1101 WP_086043615.1 redox-regulated ATPase YchF -
  J9174_RS12160 (J9174_12160) - 2348021..2348209 (-) 189 WP_138072882.1 DUF951 domain-containing protein -
  J9174_RS12165 (J9174_12165) - 2348211..2349098 (-) 888 WP_210152326.1 mechanosensitive ion channel family protein -
  J9174_RS12170 (J9174_12170) - 2349099..2349962 (-) 864 WP_210152327.1 ParB/RepB/Spo0J family partition protein -
  J9174_RS12175 (J9174_12175) - 2349955..2350716 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.60 Da        Isoelectric Point: 4.8835

>NTDB_id=556054 J9174_RS12145 WP_086043613.1 2345592..2346110(-) (ssbA) [Macrococcoides canis strain 19/EPI0118]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=556054 J9174_RS12145 WP_086043613.1 2345592..2346110(-) (ssbA) [Macrococcoides canis strain 19/EPI0118]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGTTATGACCAAGGTAGTTATGGTCAGACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AER1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366