Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J9253_RS04870 Genome accession   NZ_CP072801
Coordinates   1014047..1014544 (-) Length   165 a.a.
NCBI ID   WP_210223552.1    Uniprot ID   -
Organism   Thiothrix litoralis strain AS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1009047..1019544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9253_RS04845 (J9253_04845) - 1009278..1010678 (-) 1401 WP_210223547.1 phosphomannomutase/phosphoglucomutase -
  J9253_RS04850 (J9253_04850) dut 1010682..1011137 (-) 456 WP_210223548.1 dUTP diphosphatase -
  J9253_RS04855 (J9253_04855) coaBC 1011124..1012344 (-) 1221 WP_210223549.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  J9253_RS04860 (J9253_04860) radC 1012396..1013067 (+) 672 WP_210223550.1 DNA repair protein RadC -
  J9253_RS04865 (J9253_04865) - 1013102..1013818 (+) 717 WP_210223551.1 hypothetical protein -
  J9253_RS04870 (J9253_04870) ssb 1014047..1014544 (-) 498 WP_210223552.1 single-stranded DNA-binding protein Machinery gene
  J9253_RS04875 (J9253_04875) - 1014578..1015942 (-) 1365 WP_210223553.1 MFS transporter -
  J9253_RS04880 (J9253_04880) dbpA 1015955..1017331 (-) 1377 WP_210223554.1 ATP-dependent RNA helicase DbpA -
  J9253_RS04885 (J9253_04885) - 1017497..1018192 (+) 696 WP_210223555.1 hypothetical protein -
  J9253_RS04890 (J9253_04890) - 1018286..1018867 (+) 582 WP_210223556.1 Uma2 family endonuclease -
  J9253_RS04895 (J9253_04895) - 1019095..1019514 (-) 420 WP_210223557.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17787.59 Da        Isoelectric Point: 5.7121

>NTDB_id=555922 J9253_RS04870 WP_210223552.1 1014047..1014544(-) (ssb) [Thiothrix litoralis strain AS]
MARGINKVILVGTVGKDPEMKYMPSGDAMANISVATNESWKDKNTGEKKEATEWHRVVFFRGLADVVGKYLRKGQQVYIE
GSLKTRSWEKDGQKHYSTEIVASDMQMLGGRPGGGMESGHYEDSPAPRGNQGNTGGGYSGGSAPASSGGSNNSNNFEDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=555922 J9253_RS04870 WP_210223552.1 1014047..1014544(-) (ssb) [Thiothrix litoralis strain AS]
ATGGCACGAGGTATCAACAAAGTTATTCTGGTCGGCACGGTCGGCAAAGACCCTGAAATGAAATACATGCCCAGCGGCGA
TGCGATGGCGAATATCAGCGTCGCCACCAATGAATCCTGGAAAGACAAAAATACCGGCGAGAAAAAAGAAGCTACCGAAT
GGCATCGCGTCGTATTTTTCCGGGGCTTGGCAGATGTGGTAGGCAAATACTTGCGTAAAGGCCAACAAGTCTACATTGAA
GGCAGCCTGAAAACGCGCTCATGGGAAAAGGACGGCCAGAAACATTACTCTACTGAAATTGTCGCTTCTGACATGCAAAT
GCTGGGCGGGCGTCCGGGTGGTGGTATGGAATCAGGTCATTACGAAGATTCCCCAGCACCTCGCGGCAATCAGGGTAATA
CAGGCGGTGGTTACTCCGGTGGCAGCGCACCGGCATCGAGTGGTGGCAGCAATAACTCCAATAACTTTGAAGACTTCGAT
GACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.857

100

0.539
  ssb Glaesserella parasuis strain SC1401

48.315

100

0.521
  ssb Neisseria gonorrhoeae MS11

41.379

100

0.436
  ssb Neisseria meningitidis MC58

41.618

100

0.436