Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J9260_RS10080 Genome accession   NZ_CP072793
Coordinates   2013032..2013526 (-) Length   164 a.a.
NCBI ID   WP_210217662.1    Uniprot ID   -
Organism   Thiothrix unzii strain A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2008032..2018526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9260_RS10060 (J9260_10055) purH 2009491..2011077 (+) 1587 WP_210217658.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  J9260_RS10065 (J9260_10060) - 2011074..2011430 (-) 357 WP_210217659.1 hypothetical protein -
  J9260_RS10070 (J9260_10065) - 2011514..2012230 (-) 717 WP_210217660.1 arginyltransferase -
  J9260_RS10075 (J9260_10070) - 2012243..2012947 (-) 705 WP_210217661.1 Crp/Fnr family transcriptional regulator -
  J9260_RS10080 (J9260_10075) ssb 2013032..2013526 (-) 495 WP_210217662.1 single-stranded DNA-binding protein Machinery gene
  J9260_RS10085 (J9260_10080) - 2013559..2014917 (-) 1359 WP_210217663.1 MFS transporter -
  J9260_RS10090 (J9260_10085) - 2014977..2015966 (-) 990 WP_246499381.1 DUF523 and DUF1722 domain-containing protein -
  J9260_RS10095 (J9260_10090) - 2016017..2018113 (+) 2097 WP_210217664.1 mechanosensitive ion channel domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17898.75 Da        Isoelectric Point: 6.2457

>NTDB_id=555882 J9260_RS10080 WP_210217662.1 2013032..2013526(-) (ssb) [Thiothrix unzii strain A1]
MARGINKVILVGTVGRDPEMKYTPSGDAIANISIATSESWKDKNTGEKKEVTEWHRVVFYRQLADIVGKYVRKGQQVYIE
GSLKTRSWEKDGQKHYATDIVASEMQMLGSRQGSGMGAGSYDEAPRSSNSGGGYGSAPAAQQSAAPQSSHNDRGFEDFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=555882 J9260_RS10080 WP_210217662.1 2013032..2013526(-) (ssb) [Thiothrix unzii strain A1]
ATGGCACGTGGTATCAATAAGGTTATTTTGGTTGGCACGGTGGGTAGAGACCCCGAAATGAAGTACACACCCAGCGGTGA
TGCGATTGCAAACATCAGTATAGCCACTAGTGAGTCATGGAAAGACAAAAATACTGGTGAGAAAAAAGAAGTCACCGAAT
GGCATCGCGTGGTTTTTTACCGTCAGTTAGCAGATATTGTTGGCAAATACGTGCGTAAAGGCCAACAAGTGTATATCGAG
GGCAGTTTGAAAACGCGCTCTTGGGAAAAAGACGGTCAAAAGCATTATGCAACTGATATTGTTGCCAGCGAAATGCAAAT
GTTAGGTAGTCGTCAAGGTAGCGGTATGGGCGCGGGCAGTTACGACGAAGCTCCACGCAGCAGCAATAGTGGCGGTGGTT
ACGGTAGCGCACCTGCTGCACAACAGTCAGCGGCTCCGCAAAGCAGCCATAATGACCGTGGTTTTGAAGATTTTGATGAT
GATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.705

100

0.555
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.506
  ssb Neisseria gonorrhoeae MS11

44.262

100

0.494
  ssb Neisseria meningitidis MC58

43.716

100

0.488