Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LZ559_RS04885 Genome accession   NZ_CP090837
Coordinates   1089565..1090650 (-) Length   361 a.a.
NCBI ID   WP_030800044.1    Uniprot ID   A0ABM9H134
Organism   Streptomyces sp. R527F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084565..1095650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS04865 (LZ559_04865) - 1085320..1085871 (-) 552 WP_030800053.1 adenine phosphoribosyltransferase -
  LZ559_RS04870 (LZ559_04870) secF 1085875..1086957 (-) 1083 WP_030800051.1 protein translocase subunit SecF -
  LZ559_RS04875 (LZ559_04875) secD 1086959..1088749 (-) 1791 WP_044375602.1 protein translocase subunit SecD -
  LZ559_RS04880 (LZ559_04880) yajC 1088900..1089397 (-) 498 WP_030800046.1 preprotein translocase subunit YajC -
  LZ559_RS04885 (LZ559_04885) ruvB 1089565..1090650 (-) 1086 WP_030800044.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LZ559_RS04890 (LZ559_04890) ruvA 1090680..1091306 (-) 627 WP_007457926.1 Holliday junction branch migration protein RuvA -
  LZ559_RS04895 (LZ559_04895) ruvC 1091435..1092040 (-) 606 Protein_974 crossover junction endodeoxyribonuclease RuvC -
  LZ559_RS04900 (LZ559_04900) - 1092193..1092945 (-) 753 WP_026237929.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LZ559_RS04905 (LZ559_04905) pdxT 1093007..1093600 (-) 594 WP_030800037.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  LZ559_RS04910 (LZ559_04910) pdxS 1093607..1094527 (-) 921 WP_003970325.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  LZ559_RS04915 (LZ559_04915) - 1094649..1095197 (-) 549 WP_030800034.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38615.11 Da        Isoelectric Point: 4.7885

>NTDB_id=555540 LZ559_RS04885 WP_030800044.1 1089565..1090650(-) (ruvB) [Streptomyces sp. R527F]
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMSAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVGIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGTIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=555540 LZ559_RS04885 WP_030800044.1 1089565..1090650(-) (ruvB) [Streptomyces sp. R527F]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCGACCGGCCCGGTCTTCGACGACCGGCTGGTCGACGCCGACGC
GGACGGCGAGGACACCGCGGTCGAGGCGGCGCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCCGCCGAGATGTCCGCCCCGATCCGCATCACCTCAGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGCC
TCCTGGACGTCGGCATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGGGGCACCCCCCGTATCGCCAACCGG
CTGCTCCGCCGCGTCCGCGACTACGCCCAGGTCAAGGCGGAGGGAACGATCGACCGGGAGATCGCCGCGGCGGCCCTCAA
GGTGTACGAGGTCGACGCCCGCGGGCTCGACCGGCTGGACCGCGCCGTCCTCGGCGCCCTGCTGAAGCTGTTCGGCGGCG
GCCCCGTGGGCCTGTCCACCCTGGCGGTCGCAGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACCCCGCGTGGCCGGGTCGCCACCCCCGCGGCCTGGGCCCACCTGGGACTGGTCCC
GCCGCAGCACGGAGCAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

RuvB AAA lid domain (AAA_lid_4)

(199-272)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.553

92.244

0.485
  ruvB Streptococcus pneumoniae TIGR4

52.778

89.751

0.474
  ruvB Streptococcus pneumoniae R6

52.778

89.751

0.474
  ruvB Streptococcus pneumoniae D39

52.778

89.751

0.474
  ruvB Synechocystis sp. PCC 6803

53.503

86.981

0.465
  ruvB Helicobacter pylori 26695

50.943

88.089

0.449