Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LL229_RS11970 Genome accession   NZ_CP090823
Coordinates   2292865..2293281 (-) Length   138 a.a.
NCBI ID   WP_021216554.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 229     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287865..2298281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL229_RS11930 (LL229_2269) - 2287887..2288753 (+) 867 WP_010906309.1 RluA family pseudouridine synthase -
  LL229_RS11935 (LL229_2270) - 2288792..2289601 (-) 810 WP_010906310.1 metal ABC transporter permease -
  LL229_RS11940 (LL229_2271) - 2289594..2290331 (-) 738 WP_010906311.1 metal ABC transporter ATP-binding protein -
  LL229_RS11945 (LL229_2272) - 2290508..2291350 (-) 843 WP_010906312.1 metal ABC transporter substrate-binding protein -
  LL229_RS11950 (LL229_2273) - 2291347..2291784 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  LL229_RS11955 (LL229_2274) comGG 2291865..2292149 (-) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  LL229_RS11960 (LL229_2275) comGF 2292188..2292634 (-) 447 WP_031296844.1 competence type IV pilus minor pilin ComGF Machinery gene
  LL229_RS11965 (LL229_2276) comGE 2292597..2292893 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  LL229_RS11970 (LL229_2277) comGD 2292865..2293281 (-) 417 WP_021216554.1 competence type IV pilus minor pilin ComGD Machinery gene
  LL229_RS11975 (LL229_2278) comGC 2293256..2293525 (-) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  LL229_RS11980 (LL229_2279) - 2293686..2294423 (-) 738 WP_081172231.1 hypothetical protein -
  LL229_RS11985 (LL229_2281) - 2294627..2295406 (-) 780 WP_081172233.1 peptidoglycan amidohydrolase family protein -
  LL229_RS11990 (LL229_2282) - 2295406..2295693 (-) 288 WP_010905390.1 phage holin -
  LL229_RS11995 (LL229_03420) - 2295680..2296006 (-) 327 WP_010905389.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15902.69 Da        Isoelectric Point: 7.9826

>NTDB_id=555519 LL229_RS11970 WP_021216554.1 2292865..2293281(-) (comGD) [Lactococcus lactis subsp. lactis strain 229]
MKNEILMTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=555519 LL229_RS11970 WP_021216554.1 2292865..2293281(-) (comGD) [Lactococcus lactis subsp. lactis strain 229]
ATGAAGAACGAAATTTTAATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCAC
AACTCTTTTTTCTTTAGAAATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comGD Streptococcus mutans UA140

40.625

92.754

0.377
  comGD Streptococcus mutans UA159

40.625

92.754

0.377