Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J8Y17_RS26995 Genome accession   NZ_CP072769
Coordinates   5192397..5192918 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus cereus strain BC07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5187397..5197918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS26975 (J8Y17_26975) rplI 5188607..5189053 (-) 447 WP_000864235.1 50S ribosomal protein L9 -
  J8Y17_RS26980 (J8Y17_26980) - 5189050..5191023 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  J8Y17_RS26985 (J8Y17_26985) - 5191102..5192037 (-) 936 WP_071730776.1 YybS family protein -
  J8Y17_RS26990 (J8Y17_26990) rpsR 5192118..5192351 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  J8Y17_RS26995 (J8Y17_26995) ssbA 5192397..5192918 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  J8Y17_RS27000 (J8Y17_27000) rpsF 5192945..5193235 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  J8Y17_RS27005 (J8Y17_27005) ychF 5193427..5194527 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  J8Y17_RS27010 (J8Y17_27010) - 5194643..5194840 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  J8Y17_RS27015 (J8Y17_27015) - 5194861..5195742 (-) 882 WP_071730778.1 mechanosensitive ion channel family protein -
  J8Y17_RS27020 (J8Y17_27020) yyaC 5196002..5196598 (+) 597 WP_211479779.1 spore protease YyaC -
  J8Y17_RS27025 (J8Y17_27025) spo0J 5196619..5197470 (-) 852 WP_080489262.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=555479 J8Y17_RS26995 WP_000981967.1 5192397..5192918(-) (ssbA) [Bacillus cereus strain BC07]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=555479 J8Y17_RS26995 WP_000981967.1 5192397..5192918(-) (ssbA) [Bacillus cereus strain BC07]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382