Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SMUNUM_RS02695 Genome accession   NZ_AP014571
Coordinates   521110..521766 (-) Length   218 a.a.
NCBI ID   WP_002264438.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516110..526766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02670 (SMNUM_0481) trpD 516544..517551 (+) 1008 WP_002270152.1 anthranilate phosphoribosyltransferase -
  SMUNUM_RS02675 (SMNUM_0482) trpC 517544..518311 (+) 768 WP_002262054.1 indole-3-glycerol phosphate synthase TrpC -
  SMUNUM_RS02680 (SMNUM_0483) - 518298..518879 (+) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  SMUNUM_RS02685 (SMNUM_0484) trpB 518876..520087 (+) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  SMUNUM_RS02690 (SMNUM_0485) trpA 520091..520873 (+) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  SMUNUM_RS02695 cclA/cilC 521110..521766 (-) 657 WP_002264438.1 A24 family peptidase Machinery gene
  SMUNUM_RS02700 (SMNUM_0487) dpr 521867..522394 (+) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  SMUNUM_RS02705 (SMNUM_0488) - 522601..522807 (+) 207 WP_002262060.1 YqgQ family protein -
  SMUNUM_RS02710 (SMNUM_0489) - 522800..523771 (+) 972 WP_002268857.1 ROK family glucokinase -
  SMUNUM_RS02715 (SMNUM_0490) - 523781..524170 (+) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  SMUNUM_RS02720 (SMNUM_0491) typA 524404..526248 (+) 1845 WP_002262063.1 translational GTPase TypA -
  SMUNUM_RS02725 (SMNUM_0492) - 526277..526531 (+) 255 WP_002262064.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24859.09 Da        Isoelectric Point: 8.5763

>NTDB_id=55517 SMUNUM_RS02695 WP_002264438.1 521110..521766(-) (cclA/cilC) [Streptococcus mutans LP13]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=55517 SMUNUM_RS02695 WP_002264438.1 521110..521766(-) (cclA/cilC) [Streptococcus mutans LP13]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427
  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417
  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408

Multiple sequence alignment