Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J7Q85_RS09990 Genome accession   NZ_CP072655
Coordinates   2104280..2104780 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain Tibet-Pm1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2099280..2109780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7Q85_RS09975 (J7Q85_09975) rlmB 2099823..2100560 (+) 738 WP_005737312.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J7Q85_RS09980 (J7Q85_09980) sodC 2100646..2101206 (-) 561 WP_005737310.1 superoxide dismutase family protein -
  J7Q85_RS09985 (J7Q85_09985) uvrA 2101277..2104108 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  J7Q85_RS09990 (J7Q85_09990) ssb 2104280..2104780 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  J7Q85_RS09995 (J7Q85_09995) qatD 2105640..2106371 (-) 732 WP_005752666.1 Qat anti-phage system TatD family nuclease QatD -
  J7Q85_RS10000 (J7Q85_10000) qatC 2106368..2107684 (-) 1317 WP_032852289.1 Qat anti-phage system QueC-like protein QatC -
  J7Q85_RS10005 (J7Q85_10005) - 2107684..2108424 (-) 741 WP_005752670.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=554859 J7Q85_RS09990 WP_005719438.1 2104280..2104780(+) (ssb) [Pasteurella multocida strain Tibet-Pm1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=554859 J7Q85_RS09990 WP_005719438.1 2104280..2104780(+) (ssb) [Pasteurella multocida strain Tibet-Pm1]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47