Detailed information NTG0554832

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LZ756_RS05015
• Genome accession: NZ_CP090547
• Coordinates: 1093717..1094844 (-)
• Length: 375 a.a.
• NCBI ID: WP_234759410.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi strain OC8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1088717..1099844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ756_RS05000 (LZ756_05000)	hemC	1089449..1090366 (+)	918	WP_020851685.1	hydroxymethylbilane synthase	-
LZ756_RS05005 (LZ756_05005)	-	1090420..1091229 (-)	810	WP_021358437.1	DUF481 domain-containing protein	-
LZ756_RS05010 (LZ756_05010)	-	1092078..1093047 (+)	970	Protein_967	YafY family protein	-
LZ756_RS05015 (LZ756_05015)	pilU	1093717..1094844 (-)	1128	WP_234759410.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LZ756_RS05020 (LZ756_05020)	pilT	1095010..1096044 (-)	1035	WP_004084948.1	type IV pilus twitching motility protein PilT	Machinery gene
LZ756_RS05025 (LZ756_05025)	-	1096718..1096930 (+)	213	WP_024749215.1	hypothetical protein	-
LZ756_RS05030 (LZ756_05030)	-	1097278..1098105 (+)	828	WP_020851677.1	glycosyltransferase family 2 protein	-
LZ756_RS05035 (LZ756_05035)	-	1098246..1098500 (+)	255	WP_024749217.1	hypothetical protein	-
LZ756_RS05040 (LZ756_05040)	-	1098781..1099605 (-)	825	WP_020851675.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 42321.48 Da
• Isoelectric Point: 6.3406

>NTDB_id=554832 LZ756_RS05015 WP_234759410.1 1093717..1094844(-) (pilU) [Xylella fastidiosa subsp. sandyi strain OC8]
MTTIDFTSLLKLMAHQKASDLFITCGMPPSMKIHGNITPITQVPLTSEQSRDIVFNIMSEAQREEFEKVHECNFAIDITS
IGRFRVNAFYQRNQIGMVLRRIEMSIPTFEKLKLPQVAKELVMEKRGIIIVGATGSGKSTSMASMINHRNHNSTGHIVTI
EDPIEFIHKHEKCIITQREIGTDTDSWENALKNTLRQAPDVIVIGEVRTQETMDHAISFSETGHLVMCTLHANNANQAID
RIINFFPEERHSQLLMDLSLNLKGIIAQQLIPSADGKERCLAAEILRDSRLVQDYIRVGEIHKLKEVMQNPNDLGMTTFD
QSLVELYHSGAINYKEALRHADSQNEVRLRIKLSDGKDAQTLSQGFDGIEIAEMS

Nucleotide

• Length: 1128 bp

>NTDB_id=554832 LZ756_RS05015 WP_234759410.1 1093717..1094844(-) (pilU) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGACTACCATCGATTTCACATCCTTACTTAAGCTGATGGCGCACCAAAAAGCGTCGGATTTATTTATTACCTGTGGAAT
GCCGCCTTCAATGAAGATTCACGGCAATATCACTCCAATCACACAAGTACCGCTGACTTCAGAGCAAAGCCGTGACATAG
TCTTCAATATCATGAGTGAAGCGCAGCGCGAGGAATTCGAGAAGGTCCACGAATGCAACTTCGCAATTGACATCACCAGC
ATTGGTCGCTTCCGTGTCAACGCTTTCTATCAGCGTAACCAAATTGGTATGGTGTTACGCAGAATCGAGATGTCTATTCC
CACCTTCGAAAAACTGAAGCTCCCGCAGGTCGCTAAGGAGCTCGTCATGGAGAAGCGCGGCATCATCATCGTGGGTGCTA
CGGGTAGTGGTAAATCGACCTCAATGGCATCAATGATCAACCACCGTAATCACAACTCAACAGGACATATCGTCACTATC
GAAGATCCCATTGAGTTTATTCACAAGCACGAGAAATGCATCATCACCCAACGCGAAATAGGTACCGATACCGACAGTTG
GGAAAATGCCTTGAAAAATACCCTACGCCAAGCCCCAGATGTGATTGTGATTGGTGAGGTGCGTACTCAAGAGACAATGG
ATCATGCCATCTCGTTCTCCGAAACCGGCCATCTGGTCATGTGTACCCTACATGCCAACAACGCCAATCAAGCAATAGAC
CGCATTATTAACTTCTTCCCGGAAGAGCGGCACAGCCAATTACTGATGGATCTGTCGCTGAATCTAAAAGGCATCATCGC
TCAACAATTGATCCCATCTGCGGATGGTAAAGAGCGCTGTTTAGCAGCGGAAATTTTGCGCGACAGTCGATTAGTACAGG
ACTACATACGCGTAGGCGAGATCCATAAGCTCAAAGAAGTCATGCAAAACCCCAACGATCTTGGAATGACGACATTCGAT
CAAAGCTTGGTCGAACTCTATCATAGCGGAGCCATTAACTATAAAGAGGCACTACGCCATGCTGATTCGCAGAACGAGGT
ACGCCTGCGTATTAAACTCTCCGATGGAAAAGACGCTCAAACTCTGAGTCAAGGATTCGATGGAATAGAAATTGCAGAAA
TGTCATAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (115-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.308	97.867	0.6
pilU	Acinetobacter baylyi ADP1	60.169	94.4	0.568
pilU	Vibrio cholerae strain A1552	50.281	94.933	0.477
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.033	97.067	0.408