Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J8G07_RS11085 Genome accession   NZ_CP072612
Coordinates   2155097..2155711 (+) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150097..2160711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS11050 aroE 2150783..2151625 (+) 843 WP_032873946.1 shikimate dehydrogenase -
  J8G07_RS11055 yhbY 2151619..2151909 (+) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  J8G07_RS11060 - 2151920..2152489 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  J8G07_RS11065 yqeK 2152479..2153054 (+) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  J8G07_RS11070 rsfS 2153058..2153414 (+) 357 WP_007408260.1 ribosome silencing factor -
  J8G07_RS11075 - 2153411..2154148 (+) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  J8G07_RS11080 comER 2154217..2155038 (-) 822 WP_012118027.1 late competence protein ComER -
  J8G07_RS11085 comEA 2155097..2155711 (+) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  J8G07_RS11090 - 2155778..2156347 (+) 570 WP_003152868.1 ComE operon protein 2 -
  J8G07_RS11095 comEC 2156348..2158699 (+) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J8G07_RS11100 - 2158718..2158852 (-) 135 WP_003152870.1 YqzM family protein -
  J8G07_RS11105 - 2158893..2159044 (+) 152 Protein_2148 hypothetical protein -
  J8G07_RS11110 holA 2159084..2160125 (+) 1042 Protein_2149 DNA polymerase III subunit delta -
  J8G07_RS11115 rpsT 2160142..2160408 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=554624 J8G07_RS11085 WP_032873955.1 2155097..2155711(+) (comEA) [Bacillus amyloliquefaciens strain G10]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=554624 J8G07_RS11085 WP_032873955.1 2155097..2155711(+) (comEA) [Bacillus amyloliquefaciens strain G10]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363