Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J7655_RS04570 Genome accession   NZ_CP072610
Coordinates   1009986..1011326 (-) Length   446 a.a.
NCBI ID   WP_230926766.1    Uniprot ID   -
Organism   Pseudomonas wenzhouensis strain A20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004986..1016326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7655_RS04540 (J7655_04530) - 1005819..1006373 (-) 555 WP_230926760.1 pilus assembly PilX family protein -
  J7655_RS04545 (J7655_04535) - 1006370..1007098 (-) 729 WP_230926761.1 PilW family protein -
  J7655_RS04550 (J7655_04540) pilV 1007101..1007613 (-) 513 WP_230926762.1 type IV pilus modification protein PilV -
  J7655_RS04555 (J7655_04545) - 1007610..1008098 (-) 489 WP_420850906.1 GspH/FimT family pseudopilin -
  J7655_RS04560 (J7655_04550) - 1008208..1008717 (-) 510 WP_230926764.1 GspH/FimT family pseudopilin -
  J7655_RS04565 (J7655_04555) thiO 1008808..1009899 (+) 1092 WP_230926765.1 glycine oxidase ThiO -
  J7655_RS04570 (J7655_04560) pilR 1009986..1011326 (-) 1341 WP_230926766.1 sigma-54-dependent transcriptional regulator Regulator
  J7655_RS04575 (J7655_04565) pilS 1011329..1012921 (-) 1593 WP_230926767.1 sensor histidine kinase Regulator
  J7655_RS04580 (J7655_04570) - 1012911..1013147 (-) 237 WP_092380152.1 PP0621 family protein -
  J7655_RS04585 (J7655_04575) - 1013326..1014318 (-) 993 WP_230926768.1 outer membrane protein assembly factor BamD -
  J7655_RS04590 (J7655_04580) rluD 1014597..1015571 (+) 975 WP_230926769.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J7655_RS04595 (J7655_04585) pgeF 1015568..1016299 (+) 732 WP_230926770.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49776.10 Da        Isoelectric Point: 6.1433

>NTDB_id=554558 J7655_RS04570 WP_230926766.1 1009986..1011326(-) (pilR) [Pseudomonas wenzhouensis strain A20]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKALRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLANAM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPSNEGGEASLAHIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=554558 J7655_RS04570 WP_230926766.1 1009986..1011326(-) (pilR) [Pseudomonas wenzhouensis strain A20]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGTGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAGGAAGCGCGTGAATGGCTGGCGCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTGCAGCACATTCAACAACGCCATCCACAGGTACCCGTGGCGATG
ATCACCGCCTACGGTAGCCTGGACACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTCGCCACGGCCCTGCGCATTCGCGCGCCCGAAGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGATTCGCCACCGATGAAAGCACTGCGCAAGCAGATCCTGAAACTTTCACGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATTCACGAGCAGGGGCCGCGCGTCGAACACCCCTT
CGTTCCGGTCAACTGTGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAACAGGGCCTGTTCCAGGCTGCCAATGGAGGCACCCTGTTTCTCGATGAGGTCGCCGATCTGCCA
CTGCCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAACAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTCGCCGCCGAAGTCGCTGCCGGCCGTTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTCCCGCCGCTACGCGAGCGCCGCGAAGACATCGCGCAACTGGCCAATGCGATG
CTCGCTCGCCTGGCCGACGGCACCGGGCTGGCTGCCGCCAAACTGCATCCCGATGCCCTGGAAAAGCTCAAGAACTACCG
TTTCCCCGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTATACCCTCTGCGAAGACGACCAGATCACGCCCA
GCGACCTACGCCTGGCCGACGCCAGTGGCCCCAGCAACGAAGGCGGCGAAGCCAGCCTGGCGCATATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAACTGATCATGCAGGCACTGGAAGAAACCCGCTGGAACCGCACGGCGGCCGCGCA
ACGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511
  luxO Vibrio cholerae strain A1552

38.565

100

0.386