Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J7655_RS04575 Genome accession   NZ_CP072610
Coordinates   1011329..1012921 (-) Length   530 a.a.
NCBI ID   WP_230926767.1    Uniprot ID   -
Organism   Pseudomonas wenzhouensis strain A20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006329..1017921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7655_RS04545 (J7655_04535) - 1006370..1007098 (-) 729 WP_230926761.1 PilW family protein -
  J7655_RS04550 (J7655_04540) pilV 1007101..1007613 (-) 513 WP_230926762.1 type IV pilus modification protein PilV -
  J7655_RS04555 (J7655_04545) - 1007610..1008098 (-) 489 WP_420850906.1 GspH/FimT family pseudopilin -
  J7655_RS04560 (J7655_04550) - 1008208..1008717 (-) 510 WP_230926764.1 GspH/FimT family pseudopilin -
  J7655_RS04565 (J7655_04555) thiO 1008808..1009899 (+) 1092 WP_230926765.1 glycine oxidase ThiO -
  J7655_RS04570 (J7655_04560) pilR 1009986..1011326 (-) 1341 WP_230926766.1 sigma-54-dependent transcriptional regulator Regulator
  J7655_RS04575 (J7655_04565) pilS 1011329..1012921 (-) 1593 WP_230926767.1 sensor histidine kinase Regulator
  J7655_RS04580 (J7655_04570) - 1012911..1013147 (-) 237 WP_092380152.1 PP0621 family protein -
  J7655_RS04585 (J7655_04575) - 1013326..1014318 (-) 993 WP_230926768.1 outer membrane protein assembly factor BamD -
  J7655_RS04590 (J7655_04580) rluD 1014597..1015571 (+) 975 WP_230926769.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J7655_RS04595 (J7655_04585) pgeF 1015568..1016299 (+) 732 WP_230926770.1 peptidoglycan editing factor PgeF -
  J7655_RS04600 (J7655_04590) - 1016419..1017528 (+) 1110 WP_230927668.1 NADH:flavin oxidoreductase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59139.29 Da        Isoelectric Point: 9.2130

>NTDB_id=554559 J7655_RS04575 WP_230926767.1 1011329..1012921(-) (pilS) [Pseudomonas wenzhouensis strain A20]
MNAELSTPSRTQGRRILRLYHLYRLSIGLALVLLISSNFDEQFFDVVHIELFRTGSWVYLILNIFIAVLVHRPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRVGLLIAAIAAIALIYLTFYLSLSHPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQISETLAEKRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHCPELVKRLQQWLHNPTLRPESLQAQVDGPVLQPSFISLQRDGQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEAQLLDLKYWLHRFASEFRSSAPAD
RQLHLKTQGGSLQTRMDPQQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDDTSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQSNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=554559 J7655_RS04575 WP_230926767.1 1011329..1012921(-) (pilS) [Pseudomonas wenzhouensis strain A20]
GTGAACGCTGAACTCAGCACACCAAGCCGAACCCAGGGACGGCGCATTCTCAGGCTTTACCATCTTTATCGCCTGAGTAT
CGGCCTGGCCCTGGTTCTGCTGATTTCCAGCAACTTCGACGAGCAGTTTTTCGATGTCGTGCATATCGAGCTGTTTCGTA
CCGGCAGCTGGGTCTACCTGATCCTCAATATCTTCATCGCAGTGCTGGTGCATCGGCCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTGATCTTTCTCTCGGCCCTGTTCTATGCAGCCGGCGGTACACCCAGCGGTATCGGTAACCT
GCTGGTGGTGGCCGTAGCGATCGCCAACATCCTGCTGCGCGGTCGCGTTGGCCTGTTGATCGCCGCCATCGCCGCGATAG
CGCTGATCTACCTGACCTTCTACCTCAGTCTCAGCCACCCCGCTGCCGCTGCCCAGTACGTGCAGGCCGGCGCCCTCGGC
GCGCTGTGTTTCGCTGGCGCGTTATTCATCCAGGGCATCACCCGACGCCTGCAGATCAGTGAAACCCTGGCCGAAAAGCG
TGCAGCCGACGTAGCCAACCTCGAAGAGCTCAATGCGCAGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACA
CCCAACATCGCGTGCTGCTGGCCAATCAGGGCGCGACGCAGCTACTGGGCCGTGGCGAACTGACCGGCAAGATCATCGAC
CCACACTGCCCCGAGCTGGTCAAACGCCTGCAGCAGTGGCTGCACAACCCGACGCTGCGCCCGGAAAGCCTGCAGGCGCA
GGTCGATGGCCCGGTGCTGCAACCGAGCTTCATTTCCCTGCAACGCGATGGCCAGCAACATACGCTGGTGTTTCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAACTGGCCTCGCTGGGTCGCCTGACCGCCGGCATCGCCCACGAA
ATTCGCAACCCGCTCGGCGCAATCAGCCATGCCGCGCAGTTGTTGCAGGAATCGGAAGACTTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCGCGCCGGCGCC
AGGCCGAAGCACAACTGCTCGACCTGAAATACTGGCTACACCGCTTCGCCAGCGAATTTCGCAGCTCGGCACCGGCCGAC
CGGCAGCTCCACCTGAAAACCCAGGGCGGCAGCCTGCAGACGCGCATGGATCCACAGCAGTTGAACCAGGTACTGACCAA
TCTGGTGCAGAACGGCCTGCGCTATAGCGCCCAGAAGCACCGGCTCGGCCAGGTCTGGCTACGCCTGTTTCGCGATGACA
CCAGTGATCTGCCAGTGCTGGAGATTCTCGACGATGGCCCCGGCGTGCCGCCCGAACAGGAGCAGCACATCTTCGAGCCC
TTCTACACTACCGAGAACAAAGGCACCGGCCTCGGCCTGTATATCTCCCGTGAGCTGTGCCAGAGCAACCAGGCCCGCCT
GGACTATAAACCTCGCGAAGGGGGCGGCAGTTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(201-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.17

100

0.672