Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J5226_RS09760 Genome accession   NZ_CP072597
Coordinates   2261801..2263216 (-) Length   471 a.a.
NCBI ID   WP_215839721.1    Uniprot ID   -
Organism   Lysobacter sp. K5869     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2256801..2268216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5226_RS09740 (J5226_09740) - 2256808..2258724 (-) 1917 WP_215839717.1 tetratricopeptide repeat protein -
  J5226_RS09745 (J5226_09745) - 2258825..2259241 (-) 417 WP_215839718.1 pilin -
  J5226_RS09750 (J5226_09750) pilA2 2259409..2259831 (-) 423 WP_215839719.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J5226_RS09755 (J5226_09755) pilA2 2260711..2261133 (-) 423 WP_215839720.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J5226_RS09760 (J5226_09760) pilR 2261801..2263216 (-) 1416 WP_215839721.1 sigma-54 dependent transcriptional regulator Regulator
  J5226_RS09765 (J5226_09765) - 2263314..2264939 (-) 1626 WP_215839722.1 ATP-binding protein -
  J5226_RS09770 (J5226_09770) sucC 2265286..2266452 (+) 1167 WP_074862717.1 ADP-forming succinate--CoA ligase subunit beta -
  J5226_RS09775 (J5226_09775) sucD 2266465..2267340 (+) 876 WP_215839723.1 succinate--CoA ligase subunit alpha -
  J5226_RS09780 (J5226_09780) - 2267458..2267748 (+) 291 WP_215839724.1 CopG family transcriptional regulator -
  J5226_RS09785 (J5226_09785) - 2267745..2268041 (+) 297 WP_215839725.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50853.38 Da        Isoelectric Point: 7.1123

>NTDB_id=554463 J5226_RS09760 WP_215839721.1 2261801..2263216(-) (pilR) [Lysobacter sp. K5869]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLNEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISLKYPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLSVLRDLVRHALELHETRRNASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLAMQVKLLRAIQEKSIRPVGAQAEVTVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGTQGRVVPRLGDDALDALRAYTFPGNVRELENILERALALAEGETLSASDLRLPRLATQTAPAGVAPAAAAPG
QPPAPPGAVDPRTISPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=554463 J5226_RS09760 WP_215839721.1 2261801..2263216(-) (pilR) [Lysobacter sp. K5869]
ATGGCTGAAACCCGTAGTGCATTGGTAGTCGACGACGAACGCGATATCCGCGAGTTGCTCGTCATGACGTTGGGCCGCAT
GGGCCTGCGTTGCGATACCGCGTCGGGCCTCAATGAGGCTCGCAGTCAGCTGCTGCGCAATCGTTACGATTTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCTCGGGCATGGATCTGGTCGCTGAAATCAGCTTGAAGTATCCGAACACCCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGAGGCGCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCCGT
GGACTTGTCGGTGCTGCGCGATCTGGTCCGCCACGCGCTGGAGCTGCACGAGACCCGCCGCAACGCCAGCGAGGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTCTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACTCCGAGGGCGGCCGCGCCGACGG
GCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTGGCCGAG
CTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGATCCGCCCGGTCGGCGCCCAGGCCGAAGT
CACGGTCGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTGGCCGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCTGGACGACCTGCCCGGCCTCGCCGCC
AAGATCCTGCACCGCCTCGCCGGCACTCAGGGCCGGGTCGTGCCGCGCCTGGGCGACGACGCCCTGGACGCGCTGCGCGC
CTACACCTTCCCCGGCAACGTGCGCGAACTCGAGAACATCCTCGAACGCGCGCTGGCCCTGGCCGAAGGCGAGACCCTGA
GCGCCAGCGACCTGCGCCTGCCGCGTCTGGCCACCCAGACCGCCCCGGCCGGCGTCGCGCCCGCGGCGGCAGCCCCGGGC
CAACCGCCGGCCCCACCCGGCGCCGTCGACCCGCGCACGATCAGCCCGCGCGACACCGCCACCAGCGCCCTGCCTTCGTA
TATCGAAGAGATCGAACGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCGGCGGCGC
TGGGGATTACGTTCCGGGCGTTGCGGTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.821

99.363

0.624
  pilR Acinetobacter baumannii strain A118

49.057

100

0.497