Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   THIMO_RS14145 Genome accession   NC_019940
Coordinates   3258604..3259134 (-) Length   176 a.a.
NCBI ID   WP_015281796.1    Uniprot ID   L0H1Y6
Organism   Thioflavicoccus mobilis 8321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3253604..3264134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THIMO_RS14125 (Thimo_2969) - 3254948..3255613 (+) 666 WP_015281792.1 thiol:disulfide interchange protein DsbA/DsbL -
  THIMO_RS20855 - 3255627..3256001 (-) 375 WP_342662155.1 6-carboxytetrahydropterin synthase -
  THIMO_RS20860 - 3256011..3256409 (-) 399 Protein_2889 6-carboxytetrahydropterin synthase -
  THIMO_RS20865 - 3256446..3256724 (-) 279 Protein_2890 6-carboxytetrahydropterin synthase -
  THIMO_RS14135 (Thimo_2971) queC 3256721..3257416 (-) 696 WP_041604582.1 7-cyano-7-deazaguanine synthase QueC -
  THIMO_RS14140 (Thimo_2972) rfbD 3257428..3258333 (-) 906 WP_015281795.1 dTDP-4-dehydrorhamnose reductase -
  THIMO_RS14145 (Thimo_2974) ssb 3258604..3259134 (-) 531 WP_015281796.1 single-stranded DNA-binding protein Machinery gene
  THIMO_RS14150 (Thimo_2975) - 3259335..3260588 (-) 1254 WP_015281797.1 MFS transporter -
  THIMO_RS18465 (Thimo_2976) - 3260683..3261516 (-) 834 WP_051021939.1 c-type cytochrome -
  THIMO_RS14160 (Thimo_2977) - 3261651..3262949 (-) 1299 WP_015281799.1 sulfite oxidase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18617.32 Da        Isoelectric Point: 4.9746

>NTDB_id=55445 THIMO_RS14145 WP_015281796.1 3258604..3259134(-) (ssb) [Thioflavicoccus mobilis 8321]
MSKGSVNKVILIGNLGADPEVRYTQSGSAVANVRLATSEQWRDRNTGESQERTEWHRVVFFGKLAEIVQQYLRKGSKIYV
EGKLQTRKWQDQNGQDRYNTEVVVDINGTMQMLDSRSGGGGASVPFDDGPPAQSGGRGFGGGAPQGSAGGAPSGGGGQGG
AASSPSYDDFDDEVPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=55445 THIMO_RS14145 WP_015281796.1 3258604..3259134(-) (ssb) [Thioflavicoccus mobilis 8321]
ATGTCCAAAGGAAGCGTCAACAAGGTGATACTGATCGGCAACCTCGGGGCCGATCCAGAGGTCCGCTACACGCAAAGTGG
CAGTGCGGTGGCCAACGTGCGTCTGGCGACGTCCGAGCAGTGGCGTGACCGCAATACCGGCGAGTCCCAGGAGCGTACCG
AGTGGCATCGGGTCGTCTTCTTCGGCAAGCTCGCCGAGATCGTCCAGCAATACCTGCGTAAGGGCTCGAAGATCTATGTC
GAGGGCAAGCTCCAGACCCGCAAGTGGCAGGACCAAAACGGCCAGGACCGCTACAACACCGAGGTGGTCGTCGACATCAA
CGGGACCATGCAGATGTTGGATAGCCGGAGTGGCGGTGGCGGCGCATCGGTGCCCTTCGATGATGGCCCGCCGGCCCAGT
CCGGCGGTCGCGGCTTCGGCGGCGGCGCCCCGCAGGGCTCGGCCGGGGGCGCGCCCAGCGGCGGAGGCGGACAGGGCGGT
GCGGCTTCGAGCCCGAGCTATGATGATTTCGATGACGAAGTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0H1Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.249

100

0.568
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.528
  ssb Neisseria gonorrhoeae MS11

43.646

100

0.449
  ssb Neisseria meningitidis MC58

43.094

100

0.443

Multiple sequence alignment