Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSEST_RS17365 Genome accession   NC_019936
Coordinates   3748037..3748531 (-) Length   164 a.a.
NCBI ID   WP_015278280.1    Uniprot ID   A0A482UBI9
Organism   Stutzerimonas stutzeri RCH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3743037..3753531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEST_RS17340 (Psest_3569) - 3743165..3744511 (-) 1347 WP_015278275.1 MotA/TolQ/ExbB proton channel family protein -
  PSEST_RS17345 (Psest_3570) - 3744508..3745293 (-) 786 WP_015278276.1 DUF3450 domain-containing protein -
  PSEST_RS17350 (Psest_3571) - 3745477..3746154 (+) 678 WP_015278277.1 OmpW/AlkL family protein -
  PSEST_RS17355 (Psest_3572) - 3746226..3747149 (-) 924 WP_015278278.1 NAD-dependent epimerase/dehydratase family protein -
  PSEST_RS17360 (Psest_3573) - 3747142..3748026 (-) 885 WP_015278279.1 sugar nucleotide-binding protein -
  PSEST_RS17365 (Psest_3574) ssb 3748037..3748531 (-) 495 WP_015278280.1 single-stranded DNA-binding protein Machinery gene
  PSEST_RS17370 (Psest_3575) - 3748696..3750063 (-) 1368 WP_015278281.1 MFS transporter -
  PSEST_RS17375 (Psest_3576) uvrA 3750195..3753038 (+) 2844 WP_015278282.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18402.45 Da        Isoelectric Point: 5.9492

>NTDB_id=55416 PSEST_RS17365 WP_015278280.1 3748037..3748531(-) (ssb) [Stutzerimonas stutzeri RCH2]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGSMQLLGGRGGSSDDAPRQARPQQREPQQAPRQQAQPQQPAARQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=55416 PSEST_RS17365 WP_015278280.1 3748037..3748531(-) (ssb) [Stutzerimonas stutzeri RCH2]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCTCCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTTGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGTCTGCAGACCCGTGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACGGAAATCGTCGTCGACATGAACGGCAG
CATGCAGTTGCTGGGCGGTCGTGGCGGCAGTTCCGATGATGCCCCGCGTCAAGCTCGTCCGCAGCAGCGCGAGCCGCAGC
AGGCGCCGCGTCAGCAGGCTCAGCCGCAGCAGCCCGCTGCACGGCAACAGCCTGCGCCGGACTACGACAGCTTCGACGAC
GACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A482UBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.955

100

0.622
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.506
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.506
  ssb Neisseria meningitidis MC58

46.591

100

0.5

Multiple sequence alignment