Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J7649_RS11305 Genome accession   NZ_CP072549
Coordinates   2409040..2409627 (+) Length   195 a.a.
NCBI ID   WP_004281391.1    Uniprot ID   A0A2K8UM26
Organism   Acinetobacter lwoffii strain H7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2404040..2414627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS11285 (J7649_11285) - 2404897..2405265 (-) 369 WP_004729209.1 hypothetical protein -
  J7649_RS11290 (J7649_11290) tenA 2405488..2406159 (-) 672 WP_219308102.1 thiaminase II -
  J7649_RS11295 (J7649_11295) - 2406382..2407470 (+) 1089 WP_004647275.1 DUF475 domain-containing protein -
  J7649_RS11300 (J7649_11300) - 2407624..2408988 (+) 1365 WP_219308105.1 MFS transporter -
  J7649_RS11305 (J7649_11305) ssb 2409040..2409627 (+) 588 WP_004281391.1 single-stranded DNA-binding protein Machinery gene
  J7649_RS11310 (J7649_11310) ahpC 2409939..2410502 (+) 564 WP_004278673.1 alkyl hydroperoxide reductase subunit C -
  J7649_RS11315 (J7649_11315) - 2411124..2412431 (+) 1308 WP_005250386.1 FAD-dependent oxidoreductase -
  J7649_RS11320 (J7649_11320) - 2412435..2413283 (+) 849 WP_219308107.1 SAM-dependent methyltransferase -
  J7649_RS11330 (J7649_11330) - 2413639..2413866 (-) 228 WP_004647282.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21359.06 Da        Isoelectric Point: 6.4820

>NTDB_id=554136 J7649_RS11305 WP_004281391.1 2409040..2409627(+) (ssb) [Acinetobacter lwoffii strain H7]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=554136 J7649_RS11305 WP_004281391.1 2409040..2409627(+) (ssb) [Acinetobacter lwoffii strain H7]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTTTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGTTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAAGGCGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369