Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J7649_RS05470 Genome accession   NZ_CP072549
Coordinates   1160596..1160922 (-) Length   108 a.a.
NCBI ID   WP_219309727.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1157262..1178519 1160596..1160922 within 0


Gene organization within MGE regions


Location: 1157262..1178519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS05460 (J7649_05460) - 1157262..1157966 (+) 705 WP_004646521.1 SIMPL domain-containing protein -
  J7649_RS05465 (J7649_05465) - 1158131..1158727 (+) 597 WP_219309724.1 phosphatase PAP2 family protein -
  J7649_RS05470 (J7649_05470) ssb 1160596..1160922 (-) 327 WP_219309727.1 single-stranded DNA-binding protein Machinery gene
  J7649_RS05475 (J7649_05475) - 1161194..1163623 (-) 2430 WP_219309728.1 DUF927 domain-containing protein -
  J7649_RS05480 (J7649_05480) - 1163616..1163918 (-) 303 WP_198054629.1 hypothetical protein -
  J7649_RS05485 (J7649_05485) - 1163911..1164213 (-) 303 WP_219309730.1 hypothetical protein -
  J7649_RS05490 (J7649_05490) - 1164210..1164452 (-) 243 WP_219309732.1 hypothetical protein -
  J7649_RS05495 (J7649_05495) - 1164462..1164830 (-) 369 WP_219309734.1 hypothetical protein -
  J7649_RS05500 (J7649_05500) - 1164823..1165329 (-) 507 WP_219309736.1 Bro-N domain-containing protein -
  J7649_RS05505 (J7649_05505) - 1165326..1165544 (-) 219 WP_219309738.1 helix-turn-helix domain-containing protein -
  J7649_RS05510 (J7649_05510) - 1165549..1165842 (-) 294 WP_219309740.1 helix-turn-helix transcriptional regulator -
  J7649_RS05515 (J7649_05515) - 1165946..1166947 (-) 1002 WP_219309742.1 hypothetical protein -
  J7649_RS05520 (J7649_05520) - 1167093..1168283 (-) 1191 WP_219309743.1 tyrosine-type recombinase/integrase -
  J7649_RS05525 (J7649_05525) proB 1168476..1169609 (-) 1134 WP_004279682.1 glutamate 5-kinase -
  J7649_RS05530 (J7649_05530) cgtA 1169637..1170854 (-) 1218 WP_004646519.1 Obg family GTPase CgtA -
  J7649_RS05535 (J7649_05535) - 1171262..1171636 (-) 375 WP_004730108.1 winged helix-turn-helix transcriptional regulator -
  J7649_RS05540 (J7649_05540) - 1171808..1173265 (-) 1458 WP_219309744.1 glyceraldehyde-3-phosphate dehydrogenase -
  J7649_RS05545 (J7649_05545) rarD 1173517..1174449 (-) 933 WP_219309745.1 EamA family transporter RarD -
  J7649_RS05550 (J7649_05550) - 1174612..1175199 (-) 588 WP_044112882.1 lipocalin family protein -
  J7649_RS05555 (J7649_05555) uvrB 1175344..1177365 (-) 2022 WP_086043985.1 excinuclease ABC subunit UvrB -
  J7649_RS05560 (J7649_05560) - 1177731..1178519 (+) 789 WP_004646509.1 A1S_2505 family phage non-structural protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12224.81 Da        Isoelectric Point: 10.4716

>NTDB_id=554115 J7649_RS05470 WP_219309727.1 1160596..1160922(-) (ssb) [Acinetobacter lwoffii strain H7]
MANLNRVTVMGVLGRDPETKQFSNGGSVTTFSVATSEHWKDKTTGERKQATEWHRITTNNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGADREVTEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=554115 J7649_RS05470 WP_219309727.1 1160596..1160922(-) (ssb) [Acinetobacter lwoffii strain H7]
ATGGCAAATTTAAATAGAGTCACAGTTATGGGCGTTTTGGGTCGTGACCCTGAAACAAAGCAATTCTCCAACGGTGGCAG
CGTTACCACATTCAGCGTTGCAACTTCCGAGCATTGGAAGGACAAGACCACTGGCGAACGTAAACAGGCTACAGAATGGC
ACAGAATCACCACTAACAACCGTTTAGCCGAGATTGCGAGTAAGTACCTCAAGAAAGGTGGGAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAAGACAGTAAAGGAGCGGATCGGGAAGTAACCGAGATTCGAGCTGATGAGCTGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.481

100

0.565
  ssb Neisseria meningitidis MC58

50

98.148

0.491
  ssb Neisseria gonorrhoeae MS11

50

98.148

0.491
  ssb Vibrio cholerae strain A1552

53.608

89.815

0.481