Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J5X96_RS09615 Genome accession   NZ_CP072548
Coordinates   1985484..1986890 (-) Length   468 a.a.
NCBI ID   WP_209363420.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980484..1991890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS09600 (J5X96_09600) selB 1980863..1982722 (+) 1860 WP_209363416.1 selenocysteine-specific translation elongation factor -
  J5X96_RS09605 (J5X96_09605) - 1982750..1983607 (-) 858 WP_209363418.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  J5X96_RS09610 (J5X96_09610) aroB 1983612..1984700 (-) 1089 WP_245193463.1 3-dehydroquinate synthase -
  J5X96_RS09805 aroK 1984734..1985261 (-) 528 WP_005715891.1 shikimate kinase AroK -
  J5X96_RS09615 (J5X96_09615) comE 1985484..1986890 (-) 1407 WP_209363420.1 type IV pilus secretin PilQ Machinery gene
  J5X96_RS09620 (J5X96_09620) - 1986900..1987295 (-) 396 WP_209363422.1 competence protein ComD -
  J5X96_RS09625 (J5X96_09625) - 1987295..1987828 (-) 534 WP_209363424.1 competence protein -
  J5X96_RS09630 (J5X96_09630) - 1987825..1988343 (-) 519 WP_209363426.1 PilN domain-containing protein -
  J5X96_RS09635 (J5X96_09635) - 1988353..1989162 (-) 810 WP_209363428.1 competence protein ComA -
  J5X96_RS09640 (J5X96_09640) - 1989289..1991853 (+) 2565 WP_209363429.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 51517.54 Da        Isoelectric Point: 7.4794

>NTDB_id=554106 J5X96_RS09615 WP_209363420.1 1985484..1986890(-) (comE) [Aggregatibacter sp. 2125159857]
MKLVLSLCLKCGLFFGCFVSLVMSFAVYAEQPRVFSIRLKQAPLVPTLQQLALAQNVNLIIDDELQGTLSLQLDNVDLDQ
LFRSVAKIKQLDLWQENGIYYLSKLETAAKFATQMETPFTLPAEMMEQPTQLTTATIKLHFAKASEVMKSLTGGSGSLLS
PNGSLSFDDRSNLLLIQDEPKAIANLKKLIKELDKPIEQIAIEARIVTINGESLKELGVRWGIFNPTENAHHLSGSLAGN
GFDNITHQLNVNLPTATTPVGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEK
SGTQSVEFREAVLGLEVTPHISQDKQILLDLVVSQNAPGGRVSYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDTIT
KGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILRQGAFPESLKKSSQVTPQNKRNEPAKKR

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=554106 J5X96_RS09615 WP_209363420.1 1985484..1986890(-) (comE) [Aggregatibacter sp. 2125159857]
ATGAAATTAGTGCTTTCCCTCTGCCTAAAGTGCGGTCTGTTTTTCGGATGTTTTGTGAGTCTGGTGATGAGCTTTGCCGT
ATATGCGGAACAACCTCGCGTGTTTTCGATTCGGTTGAAGCAAGCACCATTAGTGCCAACGTTGCAACAGCTGGCATTAG
CACAAAACGTCAATTTAATTATTGACGATGAATTACAAGGCACCCTTTCACTTCAACTGGATAACGTGGACTTGGATCAG
CTCTTTCGGTCTGTTGCCAAAATCAAGCAGTTGGATTTGTGGCAAGAAAACGGTATTTATTATTTAAGTAAACTTGAGAC
CGCCGCCAAATTTGCCACCCAAATGGAAACGCCTTTTACGTTGCCTGCCGAGATGATGGAACAACCCACACAACTCACCA
CTGCCACGATTAAATTGCATTTTGCGAAAGCTTCGGAAGTGATGAAATCGCTCACCGGCGGTAGTGGTTCGCTCCTTTCT
CCCAACGGCAGTTTAAGTTTTGACGATCGCAGTAATTTATTGTTAATTCAAGATGAACCGAAAGCCATTGCGAATTTAAA
AAAGCTCATTAAAGAATTAGATAAGCCCATTGAACAAATCGCCATTGAAGCCCGAATTGTGACCATTAACGGTGAAAGCC
TCAAAGAATTGGGGGTTCGTTGGGGAATTTTTAATCCAACAGAAAATGCGCATCACCTCAGTGGAAGTCTGGCTGGTAAT
GGTTTTGACAATATCACTCATCAATTAAACGTTAACTTGCCGACGGCGACCACGCCGGTCGGTTCTGTTGCGCTGCAAGT
GGCGAAAATCAATGGGCGACTTTTAGACTTAGAATTGACCGCACTTGAGCGGGAAAACAATGTGGAGATTATCGCTAGCC
CTCGTTTGCTTACCACCAATAAGAAAAGCGCGAGTATCAAGCAAGGGACGGAATTGCCTTACATTATGGTGAATGAAAAA
AGTGGGACACAAAGCGTAGAATTTCGCGAAGCCGTATTAGGCTTGGAAGTGACACCGCATATTTCACAGGATAAACAAAT
TTTGTTGGATTTAGTGGTCAGTCAAAATGCGCCGGGTGGACGTGTTTCATACGGCCTGGGTGAAGTGGTTTCCATTGATA
AACAAGAAATTAATACACAAGTTTTCGCCAAGGACGGCGAAACCATCGTGTTGGGCGGTGTTTTTCATGATACCATCACA
AAAGGCGTGGACAAAGTGCCTTTGTTGGGGGATATTCCGGGCATTAAACGCTTATTTAGCAAAGAAAGTGAACGCCATCA
AAAACGTGAGCTGGTGATTTTCGTCACACCGCATATTTTACGCCAAGGGGCATTTCCGGAAAGTCTAAAAAAATCATCGC
AGGTAACGCCTCAGAATAAACGCAACGAACCGGCAAAAAAACGATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-441)

Bacterial type II/III secretion system short domain (Secretin_N)

(134-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

68.904

95.513

0.658
  comE Haemophilus influenzae 86-028NP

68.386

95.299

0.652
  comE Glaesserella parasuis strain SC1401

53.176

90.812

0.483
  pilQ Vibrio campbellii strain DS40M4

41.136

94.017

0.387
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.395

91.88

0.38
  pilQ Vibrio cholerae strain A1552

41.395

91.88

0.38