Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J5X96_RS00805 Genome accession   NZ_CP072548
Coordinates   165599..166084 (-) Length   161 a.a.
NCBI ID   WP_209363676.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 160599..171084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS00785 (J5X96_00785) - 160737..161348 (+) 612 WP_209363670.1 glutathione S-transferase -
  J5X96_RS00790 (J5X96_00790) - 161543..162583 (+) 1041 WP_209363672.1 YeeE/YedE family protein -
  J5X96_RS00795 (J5X96_00795) - 162599..162820 (+) 222 WP_209363674.1 sulfurtransferase TusA family protein -
  J5X96_RS09690 - 163115..163402 (-) 288 WP_256436936.1 DUF5655 domain-containing protein -
  J5X96_RS00800 (J5X96_00800) - 163418..165229 (-) 1812 WP_245193469.1 DUF262 domain-containing protein -
  J5X96_RS00805 (J5X96_00805) ssb 165599..166084 (-) 486 WP_209363676.1 single-stranded DNA-binding protein Machinery gene
  J5X96_RS00810 (J5X96_00810) uvrA 166254..169085 (+) 2832 WP_209363682.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17895.78 Da        Isoelectric Point: 5.3111

>NTDB_id=554083 J5X96_RS00805 WP_209363676.1 165599..166084(-) (ssb) [Aggregatibacter sp. 2125159857]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPSYPSQAPSAPTAPRATPASKPAAEPPMDNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=554083 J5X96_RS00805 WP_209363676.1 165599..166084(-) (ssb) [Aggregatibacter sp. 2125159857]
ATGGCTGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGTACCATGCCGAACGGCGAAGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAACACCGGCGAACGTCGTGAAGTGACCGAATGGC
ACCGCATTGTGTTCTATCGTCGTCAGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTAAAGTTTATGTTGAAGGG
CGTTTAAGAACCCGCAAATGGCAAGATCAAAATGGCCAAGATCGCTACACCACAGAAATTCAAGGCGATGTTTTACAAAT
GTTAGACAGCCGCTCTGATCGTCAATCTGGCGGCTACGCGCCGGCAGCACAGCCAAGCTACCCAAGCCAAGCACCAAGCG
CGCCAACTGCACCACGTGCCACCCCGGCAAGCAAACCGGCAGCCGAACCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

71.038

100

0.807
  ssb Vibrio cholerae strain A1552

58.046

100

0.627
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.528
  ssb Neisseria meningitidis MC58

47.977

100

0.516