Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J7D37_RS00865 Genome accession   NZ_CP072526
Coordinates   185574..186704 (-) Length   376 a.a.
NCBI ID   WP_209303384.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 180574..191704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS00840 (J7D37_00840) - 180749..181513 (-) 765 WP_000786957.1 AraC family transcriptional regulator -
  J7D37_RS00845 (J7D37_00845) - 181535..182749 (-) 1215 WP_000372838.1 MFS transporter -
  J7D37_RS00850 (J7D37_00850) - 182886..183536 (+) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  J7D37_RS00855 (J7D37_00855) - 183642..184562 (+) 921 WP_000084546.1 DMT family transporter -
  J7D37_RS00860 (J7D37_00860) - 184954..185523 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  J7D37_RS00865 (J7D37_00865) dprA 185574..186704 (-) 1131 WP_209303384.1 DNA-processing protein DprA Machinery gene
  J7D37_RS00870 (J7D37_00870) tsaP 186725..187879 (-) 1155 WP_209303385.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J7D37_RS00875 (J7D37_00875) def 188002..188532 (+) 531 WP_001196539.1 peptide deformylase -
  J7D37_RS00880 (J7D37_00880) - 188569..188997 (+) 429 WP_209303386.1 DUF2946 family protein -
  J7D37_RS00885 (J7D37_00885) - 189070..191184 (+) 2115 WP_057693564.1 TonB-dependent copper receptor -
  J7D37_RS00890 (J7D37_00890) - 191238..191444 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41901.47 Da        Isoelectric Point: 6.5416

>NTDB_id=554013 J7D37_RS00865 WP_209303384.1 185574..186704(-) (dprA) [Acinetobacter baumannii strain DETAB-E227]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
VQHTYFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=554013 J7D37_RS00865 WP_209303384.1 185574..186704(-) (dprA) [Acinetobacter baumannii strain DETAB-E227]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGTATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.872

100

0.979

  dprA Acinetobacter baumannii strain A118

97.606

100

0.976

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378