Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J7445_RS10730 Genome accession   NZ_CP072524
Coordinates   2266639..2266938 (+) Length   99 a.a.
NCBI ID   WP_209283050.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261639..2271938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS10730 (J7445_10730) comE 2266639..2266938 (+) 300 WP_209283050.1 helix-hairpin-helix domain-containing protein Machinery gene
  J7445_RS10735 (J7445_10735) - 2267135..2267254 (-) 120 Protein_2079 IS481 family transposase -
  J7445_RS10740 (J7445_10740) - 2267372..2268877 (-) 1506 WP_209283051.1 hypothetical protein -
  J7445_RS10745 (J7445_10745) - 2269035..2269340 (-) 306 WP_209283052.1 MGMT family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10199.91 Da        Isoelectric Point: 10.6262

>NTDB_id=553922 J7445_RS10730 WP_209283050.1 2266639..2266938(+) (comE) [Neisseria sicca strain NS20201025]
MKKLLFAALSVLTASLSLAAVNINTASSSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VAPAPANSKAKNAVPSPKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=553922 J7445_RS10730 WP_209283050.1 2266639..2266938(+) (comE) [Neisseria sicca strain NS20201025]
ATGAAAAAACTCCTCTTTGCCGCACTCTCCGTTTTAACTGCCTCGCTGTCGCTGGCAGCCGTCAACATCAATACCGCCTC
TTCTTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCGAAAGCCATTGTGGACTACCGTCAGCAGCATGGTG
CCTTCAAATCGGTGGAAGAGCTCAAAAACGTCAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGGCCGAAGCAACC
GTCGCGCCCGCACCTGCAAACTCAAAAGCTAAAAACGCCGTCCCATCACCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58

100

0.586
  comE Neisseria gonorrhoeae MS11

58

100

0.586
  comE Neisseria gonorrhoeae MS11

58

100

0.586
  comE Neisseria gonorrhoeae MS11

58

100

0.586
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

81.818

0.444
  comEA Vibrio parahaemolyticus RIMD 2210633

48.864

88.889

0.434