Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J7445_RS03060 Genome accession   NZ_CP072524
Coordinates   645801..646316 (+) Length   171 a.a.
NCBI ID   WP_070656718.1    Uniprot ID   A0A2I1XF77
Organism   Neisseria sicca strain NS20201025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 643655..666144 645801..646316 within 0


Gene organization within MGE regions


Location: 643655..666144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS03050 (J7445_03050) - 643655..644284 (+) 630 WP_003756649.1 lytic transglycosylase domain-containing protein -
  J7445_RS03055 (J7445_03055) - 644415..645797 (+) 1383 WP_070656717.1 MFS transporter -
  J7445_RS03060 (J7445_03060) ssb 645801..646316 (+) 516 WP_070656718.1 single-stranded DNA-binding protein Machinery gene
  J7445_RS03065 (J7445_03065) - 646412..647743 (+) 1332 WP_244969497.1 site-specific integrase -
  J7445_RS03070 (J7445_03070) - 647733..649253 (+) 1521 WP_244969498.1 site-specific integrase -
  J7445_RS03075 (J7445_03075) - 649256..651298 (+) 2043 WP_070656720.1 integrase -
  J7445_RS03080 (J7445_03080) - 651300..651710 (+) 411 WP_016688071.1 hypothetical protein -
  J7445_RS03085 (J7445_03085) - 652263..653045 (+) 783 WP_029609556.1 hypothetical protein -
  J7445_RS03090 (J7445_03090) - 653159..653818 (+) 660 WP_070495266.1 phosphoesterase -
  J7445_RS03095 (J7445_03095) - 654033..654839 (-) 807 WP_209283133.1 integrase core domain-containing protein -
  J7445_RS03100 (J7445_03100) - 654912..655739 (-) 828 Protein_604 IS5 family transposase -
  J7445_RS03105 (J7445_03105) - 655844..656068 (+) 225 WP_033002664.1 hypothetical protein -
  J7445_RS03110 (J7445_03110) - 656140..657834 (-) 1695 WP_244969499.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  J7445_RS03115 (J7445_03115) - 658033..658998 (-) 966 WP_070540573.1 TIGR03571 family LLM class oxidoreductase -
  J7445_RS03120 (J7445_03120) - 659178..660077 (+) 900 WP_019269929.1 LysR family transcriptional regulator -
  J7445_RS03125 (J7445_03125) - 660296..661639 (+) 1344 WP_049229542.1 FAD-dependent oxidoreductase -
  J7445_RS03130 (J7445_03130) - 661694..662295 (-) 602 Protein_610 transposase -
  J7445_RS03135 (J7445_03135) - 663301..666144 (+) 2844 WP_070656664.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19149.20 Da        Isoelectric Point: 5.3108

>NTDB_id=553901 J7445_RS03060 WP_070656718.1 645801..646316(+) (ssb) [Neisseria sicca strain NS20201025]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRRLAEIAGQYLKKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGGYNQGGYQQQAPQQQYQAAPQNQEPPAAPRRQAPAAPAA
PVEDIDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=553901 J7445_RS03060 WP_070656718.1 645801..646316(+) (ssb) [Neisseria sicca strain NS20201025]
ATGTCATTAAACAAAGTCATCCTTATCGGCCGTCTCGGTCGCGACCCCGAAGTCCGCTACATGCCCAACGGCGAAGCCGT
CTGCAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGTCAACGCGTAGAGCGTACCGAATGGCACAACA
TCACCATGTACCGCCGCCTCGCCGAAATCGCCGGACAATACCTGAAAAAAGGCAGCCAAGTGTATCTGGAAGGCCGCATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAACGTACCGCATATGACATCATCGCCAACGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGCGGCGGCGCACCTTACGACGACGGCGGTTACAACCAAGGCGGCTACCAACAACAAGCGCCGC
AACAACAATACCAAGCCGCCCCGCAAAACCAAGAGCCTCCCGCAGCCCCCCGCCGCCAAGCTCCCGCCGCACCGGCTGCT
CCAGTTGAAGACATCGACGACGATATTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1XF77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

84.091

100

0.865
  ssb Neisseria meningitidis MC58

82.857

100

0.848
  ssb Vibrio cholerae strain A1552

48.603

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.109

100

0.485