Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   IUD23_RS02645 Genome accession   NZ_CP090316
Coordinates   571543..572601 (+) Length   352 a.a.
NCBI ID   WP_038227889.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566543..577601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS02635 (IUD23_02635) - 567605..568570 (+) 966 WP_038227885.1 aldo/keto reductase -
  IUD23_RS02640 (IUD23_02640) - 568874..571303 (-) 2430 WP_040123247.1 penicillin-binding protein 1A -
  IUD23_RS02645 (IUD23_02645) pilM 571543..572601 (+) 1059 WP_038227889.1 type IV pilus biogenesis protein PilM Machinery gene
  IUD23_RS02650 (IUD23_02650) - 572601..573266 (+) 666 WP_038227891.1 PilN domain-containing protein -
  IUD23_RS02655 (IUD23_02655) - 573263..573931 (+) 669 WP_038227892.1 type 4a pilus biogenesis protein PilO -
  IUD23_RS02660 (IUD23_02660) - 573928..574458 (+) 531 WP_011098214.1 pilus assembly protein PilP -
  IUD23_RS02665 (IUD23_02665) comQ/pilQ 574458..576368 (+) 1911 WP_038210668.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37539.19 Da        Isoelectric Point: 4.6448

>NTDB_id=553557 IUD23_RS02645 WP_038227889.1 571543..572601(+) (pilM) [Xylella fastidiosa subsp. morus strain Riv16]
MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAEKGIVEVEQVGEAIRRAVSRSGTKVKFAAAA
VAGSAVITKLIPMPAGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTDMVQVLLAASRSENVELRQSALELG
GLTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYAREQLFGGKQLTDEVMHRYGMTYEE
AGQAKRQGGLPQSYDVEVLGPFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLA
QMTLGAKVQAHTLAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=553557 IUD23_RS02645 WP_038227889.1 571543..572601(+) (pilM) [Xylella fastidiosa subsp. morus strain Riv16]
GTGGGGCTTTTTTCCAAAAAACAGTCGGTATTGGTTGGCGTCGACATTAGTTCAACTGCAGTGAAGCTCTTACAGCTTTC
CCGCAGTGGTAATCGCTTCAAGGTGGAACACTATGCTGTGGAGCCGCTACCTCTGAATGCAGTCGCCGAGAAGGGCATCG
TTGAAGTCGAGCAGGTTGGTGAAGCAATCCGTCGTGCGGTAAGTCGTTCTGGAACTAAGGTCAAATTTGCCGCTGCTGCG
GTTGCCGGTTCGGCAGTGATCACCAAGTTGATACCGATGCCTGCTGGTCTGGACGAGCAGGATTTGGAAGCCCAGATAGA
AATAGAGGCTACGAATTACATCCCGTACCCTATTGAAGAGGTCAGCCTAGATTTCGAGGTGCTTGGTCCGGTTCCCAACA
ACACGGATATGGTCCAAGTTTTGCTAGCTGCGTCTCGTTCGGAGAATGTCGAATTGCGCCAATCTGCGTTGGAGCTGGGG
GGGTTGACTGCCAAGGTTATTGACGTGGAAGCTTTAGCGGTTGAGAACGCTTTCTCTCTTATTGCCCAAGAACTGTCGGT
TGGGAGTAATGCATTGGTTGCATTGATCGACATCGGTGCAACGATGTCGACGCTTAATGTGCTGCATAGTGGTCGCAGTT
TGTACGCGCGCGAGCAGCTATTTGGTGGTAAGCAGCTTACTGACGAAGTAATGCATCGCTATGGGATGACTTACGAGGAG
GCTGGTCAGGCCAAGCGTCAAGGAGGTTTGCCGCAAAGCTATGATGTTGAAGTGCTGGGACCATTTAAGGACTCTGTGAT
ACAGCAGATCAGCCGTTTATTACAGTTTTTCTATGCTGGCAGTGAGTACAACCGAGTTGATTGCATCGTGTTGGCGGGAG
GCTGTGCTGTGATTGCGGGGTTACCGGCTATGGTCGAAGAACGGTTGGGTGTCGTTACCGTTGTGGCTAATCCGCTTGCG
CAGATGACTTTAGGGGCGAAAGTGCAAGCACACACGCTTGCTCAAGATGCACCTGCTTTAATGATTGCTACTGGTCTGGC
TTTGAGGAGTTTTGACTGA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

48.58

100

0.486
  comM Acinetobacter nosocomialis M2

48.58

100

0.486
  comM/pilM Acinetobacter baylyi ADP1

47.727

100

0.477
  pilM Legionella pneumophila strain ERS1305867

45.326

100

0.455