Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   J7U24_RS07040 Genome accession   NZ_CP072440
Coordinates   1342767..1344260 (-) Length   497 a.a.
NCBI ID   WP_372434663.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337767..1349260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS07010 (J7U24_06990) - 1337897..1338274 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U24_RS07015 (J7U24_06995) - 1338279..1338977 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  J7U24_RS07020 (J7U24_07000) - 1338989..1339774 (+) 786 WP_002951425.1 hypothetical protein -
  J7U24_RS07025 (J7U24_07005) amiF 1339824..1340753 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U24_RS07030 (J7U24_07010) amiE 1340746..1341831 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U24_RS07035 (J7U24_07015) amiD 1341841..1342767 (-) 927 WP_113870320.1 oligopeptide ABC transporter permease OppC Regulator
  J7U24_RS07040 (J7U24_07020) amiC 1342767..1344260 (-) 1494 WP_372434663.1 ABC transporter permease Regulator
  J7U24_RS07045 (J7U24_07025) amiA 1344322..1346289 (-) 1968 WP_372434664.1 peptide ABC transporter substrate-binding protein Regulator
  J7U24_RS07050 (J7U24_07030) - 1346644..1347821 (+) 1178 Protein_1348 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55765.65 Da        Isoelectric Point: 10.0970

>NTDB_id=553231 J7U24_RS07040 WP_372434663.1 1342767..1344260(-) (amiC) [Streptococcus thermophilus strain S24730]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=553231 J7U24_RS07040 WP_372434663.1 1342767..1344260(-) (amiC) [Streptococcus thermophilus strain S24730]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

98.793

100

0.988
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974