Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   J7U24_RS07035 Genome accession   NZ_CP072440
Coordinates   1341841..1342767 (-) Length   308 a.a.
NCBI ID   WP_113870320.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336841..1347767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS07005 (J7U24_06985) - 1336918..1337712 (-) 795 WP_180479479.1 HAD-IIB family hydrolase -
  J7U24_RS07010 (J7U24_06990) - 1337897..1338274 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U24_RS07015 (J7U24_06995) - 1338279..1338977 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  J7U24_RS07020 (J7U24_07000) - 1338989..1339774 (+) 786 WP_002951425.1 hypothetical protein -
  J7U24_RS07025 (J7U24_07005) amiF 1339824..1340753 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U24_RS07030 (J7U24_07010) amiE 1340746..1341831 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U24_RS07035 (J7U24_07015) amiD 1341841..1342767 (-) 927 WP_113870320.1 oligopeptide ABC transporter permease OppC Regulator
  J7U24_RS07040 (J7U24_07020) amiC 1342767..1344260 (-) 1494 WP_372434663.1 ABC transporter permease Regulator
  J7U24_RS07045 (J7U24_07025) amiA 1344322..1346289 (-) 1968 WP_372434664.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34708.88 Da        Isoelectric Point: 9.7054

>NTDB_id=553230 J7U24_RS07035 WP_113870320.1 1341841..1342767(-) (amiD) [Streptococcus thermophilus strain S24730]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=553230 J7U24_RS07035 WP_113870320.1 1341841..1342767(-) (amiD) [Streptococcus thermophilus strain S24730]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCTCTCTTTATTA
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

99.675

100

0.997
  amiD Streptococcus thermophilus LMD-9

99.675

100

0.997
  amiD Streptococcus salivarius strain HSISS4

96.104

100

0.961