Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J7U24_RS07025 Genome accession   NZ_CP072440
Coordinates   1339824..1340753 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus strain S24730     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334824..1345753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS07000 (J7U24_06980) - 1336110..1336925 (-) 816 WP_180473278.1 Cof-type HAD-IIB family hydrolase -
  J7U24_RS07005 (J7U24_06985) - 1336918..1337712 (-) 795 WP_180479479.1 HAD-IIB family hydrolase -
  J7U24_RS07010 (J7U24_06990) - 1337897..1338274 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U24_RS07015 (J7U24_06995) - 1338279..1338977 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  J7U24_RS07020 (J7U24_07000) - 1338989..1339774 (+) 786 WP_002951425.1 hypothetical protein -
  J7U24_RS07025 (J7U24_07005) amiF 1339824..1340753 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  J7U24_RS07030 (J7U24_07010) amiE 1340746..1341831 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7U24_RS07035 (J7U24_07015) amiD 1341841..1342767 (-) 927 WP_113870320.1 oligopeptide ABC transporter permease OppC Regulator
  J7U24_RS07040 (J7U24_07020) amiC 1342767..1344260 (-) 1494 WP_372434663.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=553228 J7U24_RS07025 WP_002951426.1 1339824..1340753(-) (amiF) [Streptococcus thermophilus strain S24730]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=553228 J7U24_RS07025 WP_002951426.1 1339824..1340753(-) (amiF) [Streptococcus thermophilus strain S24730]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTTCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981