Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   THECO_RS18385 Genome accession   NC_019897
Coordinates   4005458..4005949 (+) Length   163 a.a.
NCBI ID   WP_015256516.1    Uniprot ID   -
Organism   Thermobacillus composti KWC4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4000458..4010949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THECO_RS18345 (Theco_3772) yyaC 4000830..4001447 (-) 618 WP_015256509.1 spore protease YyaC -
  THECO_RS18350 (Theco_3773) - 4001581..4001853 (+) 273 WP_015256510.1 DUF3343 domain-containing protein -
  THECO_RS18355 (Theco_3774) - 4001850..4002665 (+) 816 WP_015256511.1 mechanosensitive ion channel family protein -
  THECO_RS18360 (Theco_3775) - 4002729..4002965 (+) 237 WP_015256512.1 DUF951 domain-containing protein -
  THECO_RS22615 - 4003662..4003769 (-) 108 WP_157373634.1 putative holin-like toxin -
  THECO_RS18370 (Theco_3777) - 4003933..4004133 (+) 201 WP_015256513.1 hypothetical protein -
  THECO_RS18375 (Theco_3778) - 4004710..4004892 (-) 183 WP_015256514.1 YjzC family protein -
  THECO_RS18380 (Theco_3779) rpsF 4005124..4005411 (+) 288 WP_015256515.1 30S ribosomal protein S6 -
  THECO_RS18385 (Theco_3780) ssbA 4005458..4005949 (+) 492 WP_015256516.1 single-stranded DNA-binding protein Machinery gene
  THECO_RS18390 (Theco_3781) rpsR 4005975..4006286 (+) 312 WP_015256517.1 30S ribosomal protein S18 -
  THECO_RS18395 (Theco_3782) - 4006522..4007427 (+) 906 WP_015256518.1 AraC family transcriptional regulator -
  THECO_RS18400 (Theco_3783) - 4007460..4008422 (+) 963 WP_015256519.1 zinc-binding alcohol dehydrogenase -
  THECO_RS18405 (Theco_3784) - 4008448..4009281 (+) 834 WP_015256520.1 sugar phosphate isomerase/epimerase -
  THECO_RS18410 (Theco_3785) - 4009374..4009709 (-) 336 WP_015256521.1 DUF4870 domain-containing protein -
  THECO_RS18415 (Theco_3786) - 4009839..4010876 (+) 1038 WP_015256522.1 LCP family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17902.77 Da        Isoelectric Point: 5.0338

>NTDB_id=55304 THECO_RS18385 WP_015256516.1 4005458..4005949(+) (ssbA) [Thermobacillus composti KWC4]
MLNRVILIGRLTRDPEMRYTPSGVAVTQFTLAVDRPFTNSTGEREADFIPIVVWRQLAETCANYLRKGRLAAVEGRIQVR
HYDNNEGRRVYVTEVVADNVRFLEPPNRENRDDAGGYGAGAGYSGGYGGSSGGYGGGRGGARNDDPFKDDGRPIDISEDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=55304 THECO_RS18385 WP_015256516.1 4005458..4005949(+) (ssbA) [Thermobacillus composti KWC4]
ATGTTGAACCGGGTCATATTGATCGGGAGATTGACGCGGGATCCCGAGATGCGTTATACGCCTTCCGGCGTGGCCGTCAC
GCAGTTTACGCTGGCGGTTGACCGGCCGTTTACGAACAGCACCGGGGAGCGCGAAGCGGATTTCATCCCGATCGTCGTCT
GGCGCCAATTGGCCGAGACATGCGCGAACTATCTGCGCAAAGGCCGTCTCGCAGCGGTCGAAGGCCGGATTCAGGTGCGC
CATTATGACAATAACGAAGGGCGCAGAGTGTACGTGACCGAAGTGGTGGCCGACAACGTGCGGTTCCTTGAACCGCCGAA
CCGGGAAAACCGCGACGATGCCGGAGGTTACGGCGCGGGGGCCGGCTATTCGGGCGGCTACGGCGGATCGTCCGGCGGTT
ACGGCGGCGGCCGCGGCGGCGCCCGCAACGACGACCCGTTCAAGGATGACGGACGCCCAATCGATATTTCGGAAGACGAT
CTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

48.837

100

0.515
  ssb Neisseria meningitidis MC58

34.066

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.867

69.325

0.38

Multiple sequence alignment