Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HP1CL_RS05440 Genome accession   NZ_AP013356
Coordinates   1120316..1121326 (+) Length   336 a.a.
NCBI ID   WP_000664449.1    Uniprot ID   O25699
Organism   Helicobacter pylori 26695-1CL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115316..1126326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CL_RS05415 - 1115516..1116838 (-) 1323 WP_000423121.1 M23 family metallopeptidase -
  HP1CL_RS05420 - 1116848..1117792 (-) 945 WP_000911251.1 outer membrane beta-barrel protein -
  HP1CL_RS05425 - 1117801..1118643 (-) 843 WP_001862786.1 outer membrane beta-barrel protein -
  HP1CL_RS05430 - 1118633..1119355 (-) 723 WP_001862785.1 hypothetical protein -
  HP1CL_RS05435 panB 1119504..1120316 (+) 813 WP_000062669.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HP1CL_RS05440 ruvB 1120316..1121326 (+) 1011 WP_000664449.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HP1CL_RS05445 tatB 1121394..1121876 (+) 483 WP_000467616.1 Sec-independent protein translocase protein TatB -
  HP1CL_RS05450 tatC 1121869..1122630 (+) 762 WP_000461250.1 twin-arginine translocase subunit TatC -
  HP1CL_RS05455 queA 1122631..1123668 (+) 1038 WP_000657423.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HP1CL_RS05460 rsmG 1123665..1124201 (+) 537 WP_001068828.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HP1CL_RS05465 - 1124195..1124425 (+) 231 WP_000944436.1 PP0621 family protein -
  HP1CL_RS05470 - 1124428..1124835 (+) 408 WP_000906037.1 hypothetical protein -
  HP1CL_RS05480 - 1124968..1125540 (-) 573 WP_001879972.1 outer membrane protein -
  HP1CL_RS05485 - 1125861..1126235 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37360.42 Da        Isoelectric Point: 6.0715

>NTDB_id=55280 HP1CL_RS05440 WP_000664449.1 1120316..1121326(+) (ruvB) [Helicobacter pylori 26695-1CL]
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THELLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=55280 HP1CL_RS05440 WP_000664449.1 1120316..1121326(+) (ruvB) [Helicobacter pylori 26695-1CL]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAGATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTTAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAACCCTAGCGAACT
GGCCCTCATCATTAAAAAAGCTGCCGTTAAACTCAACCAAGACATCAAACAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGAGCTCTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25699

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

100

100

1
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.744

97.619

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482

Multiple sequence alignment