Detailed information NTG0552721

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: J7T77_RS08815
• Genome accession: NZ_CP072430
• Coordinates: 1695002..1696102 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24746
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1690002..1701102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7T77_RS08775 (J7T77_08655)	-	1690614..1690811 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7T77_RS08780 (J7T77_08660)	-	1691060..1692253 (-)	1194	WP_084831204.1	acetate kinase	-
J7T77_RS08785 (J7T77_08665)	comYH	1692309..1693265 (-)	957	WP_084831205.1	class I SAM-dependent methyltransferase	Machinery gene
J7T77_RS08790 (J7T77_08670)	comGG	1693310..1693627 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
J7T77_RS08795 (J7T77_08675)	comYF	1693605..1694042 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7T77_RS08800 (J7T77_08680)	comGE	1694026..1694319 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
J7T77_RS08805 (J7T77_08685)	comGD	1694291..1694719 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
J7T77_RS08810 (J7T77_08690)	comYC	1694679..1695005 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7T77_RS08815 (J7T77_08695)	comYB	1695002..1696102 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7T77_RS08820 (J7T77_08700)	comGA/cglA/cilD	1695984..1696925 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
J7T77_RS08825 (J7T77_08705)	-	1697006..1697368 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=552721 J7T77_RS08815 WP_120764773.1 1695002..1696102(-) (comYB) [Streptococcus thermophilus strain S24746]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=552721 J7T77_RS08815 WP_120764773.1 1695002..1696102(-) (comYB) [Streptococcus thermophilus strain S24746]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413