NTDB

Overview

Name	comE	Type	Machinery gene
Locus tag	LVO07_RS07035	Genome accession	NZ_CP089930
Coordinates	1454378..1455616 (-)	Length	412 a.a.
NCBI ID	WP_225761982.1	Uniprot ID	-
Organism	Escherichia coli strain E69
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1449378..1460616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVO07_RS07015 (LVO07_07015)	dam	1449976..1450812 (-)	837	WP_000742146.1	adenine-specific DNA-methyltransferase	-
LVO07_RS07020 (LVO07_07020)	damX	1450919..1452220 (-)	1302	WP_225761981.1	cell division protein DamX	-
LVO07_RS07025 (LVO07_07025)	aroB	1452311..1453399 (-)	1089	WP_000439868.1	3-dehydroquinate synthase	-
LVO07_RS07030 (LVO07_07030)	aroK	1453456..1453977 (-)	522	WP_000818618.1	shikimate kinase AroK	-
LVO07_RS07035 (LVO07_07035)	comE	1454378..1455616 (-)	1239	WP_225761982.1	DNA uptake porin HofQ	Machinery gene
LVO07_RS07040 (LVO07_07040)	hofP	1455528..1455932 (-)	405	WP_001264128.1	DUF2531 family protein	-
LVO07_RS07045 (LVO07_07045)	hofO	1455922..1456362 (-)	441	WP_001093899.1	DNA utilization protein HofO	-
LVO07_RS07050 (LVO07_07050)	-	1456346..1456885 (-)	540	WP_222680812.1	PilN domain-containing protein	-
LVO07_RS07055 (LVO07_07055)	hofM	1456885..1457664 (-)	780	WP_105281184.1	DNA utilization protein HofM	-
LVO07_RS07060 (LVO07_07060)	mrcA	1457784..1460336 (+)	2553	WP_016159535.1	peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA	-

Sequence

Protein

Download Length: 412 a.a. Molecular weight: 44906.54 Da Isoelectric Point: 5.9488

                                >NTDB_id=552571 LVO07_RS07035 WP_225761982.1 1454378..1455616(-) (comE) [Escherichia coli strain E69]

MKQWIAALLLMMIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVNGTVSLHLTDVPWKQALQTVVKSAGL

ITRQEGNILSVHSVAWQNDNIARQEAEQARVQANLPLENRNITLQYADAVELAKAGEKLLSAKGSMTVDKRTNRLLLRDN

KTALSALEQWVAQMDLPVGQVELLAHIVTINEKSLRELGVKWTLADAQQTGGVGQVTTLGGDLSVATATTHIGFNIGRIN

GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL

HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL

VVFITPRLVSSE

Nucleotide

Download Length: 1239 bp

                                >NTDB_id=552571 LVO07_RS07035 WP_225761982.1 1454378..1455616(-) (comE) [Escherichia coli strain E69]

ATGAAGCAATGGATAGCCGCACTACTGTTGATGATGATACCCAGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT

GGTGGATGACGTTCCGGTGGCTCAGGTGTTACAGGCGCTGGCTGAACAGGAGAAGTTAAACCTGGTGGTTTCGCCAGACG

TCAATGGTACGGTGTCGTTACATCTCACTGACGTTCCCTGGAAACAGGCACTACAAACCGTAGTGAAAAGCGCCGGGCTG

ATAACGCGCCAGGAAGGCAACATTCTTTCAGTGCATTCCGTTGCCTGGCAGAATGACAATATCGCCCGTCAGGAGGCTGA

ACAGGCGCGGGTGCAGGCAAATCTGCCGCTGGAAAATCGCAATATTACTCTGCAATACGCCGACGCCGTAGAGCTGGCGA

AAGCAGGAGAAAAGCTACTTAGCGCCAAAGGCAGCATGACTGTCGATAAACGTACTAATCGCCTTTTGCTGCGTGATAAC

AAAACGGCGTTAAGCGCACTGGAGCAGTGGGTAGCGCAAATGGATTTGCCGGTCGGGCAGGTTGAACTGTTGGCGCACAT

TGTCACCATTAATGAAAAAAGTCTGCGCGAGTTAGGCGTGAAATGGACGCTGGCCGATGCGCAACAAACCGGCGGCGTTG

GGCAAGTGACCACGCTCGGCGGCGATCTCTCTGTGGCAACGGCAACGACGCATATCGGTTTTAACATTGGGCGTATCAAC

GGGCGTTTACTGGATCTGGAGCTTTCCGCGCTCGAACAAAAACAGCAACTGGATATTATCGCCAGCCCGCGTCTGCTGGC

CTCACATCTCCAGCCTGCCAGCATTAAACAGGGAAGCGAGATCCCGTATCAGGTTTCCAGTGGTGAAAGCGGCGCGACGT

CGGTGGAATTTAAAGAGGCCGTACTGGGAATGGAAGTCACGCCCACGGTGTTACAAAAAGGTCGCATCCGACTGAAATTA

CACATCAGCCAGAACGTTCCGGGACAGGTGCTACAACAAGCTGATGGCGAAGTGCTGGCGATTGATAAGCAGGAGATCGA

AACGCAGGTTGAAGTAAAAAGCGGAGAAACGCTGGCACTGGGTGGTATTTTTACCCGTAAAAATAAATCGGGTCAGGATA

GCGTACCGCTGTTGGGCGACATCCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA

GTGGTATTTATCACGCCACGGTTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(120-179)

Bacterial type II and III secretion system protein (Secretin)

(250-409)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comE	Haemophilus influenzae Rd KW20	37.385	100	0.396
pilQ	Vibrio campbellii strain DS40M4	38.48	100	0.393
comE	Haemophilus influenzae 86-028NP	37.156	100	0.393
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	38.015	100	0.381
pilQ	Vibrio cholerae strain A1552	38.015	100	0.381
pilQ	Pseudomonas aeruginosa PAK	35.092	100	0.371

Detailed information NTG0552571