Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiA   Type   Regulator
Locus tag   J4854_RS03380 Genome accession   NZ_CP072329
Coordinates   645977..647941 (-) Length   654 a.a.
NCBI ID   WP_200772241.1    Uniprot ID   A0A9X0WNU0
Organism   Streptococcus lactarius strain CCUG 66490     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 613016..690809 645977..647941 within 0


Gene organization within MGE regions


Location: 613016..690809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03235 (J4854_03235) - 613350..613556 (-) 207 WP_003006064.1 helix-turn-helix domain-containing protein -
  J4854_RS03240 (J4854_03240) - 613567..614088 (-) 522 WP_200772214.1 DUF2975 domain-containing protein -
  J4854_RS03245 (J4854_03245) - 614342..615604 (+) 1263 WP_200772215.1 DUF6287 domain-containing protein -
  J4854_RS03250 (J4854_03250) - 615825..616274 (-) 450 WP_200772216.1 GNAT family N-acetyltransferase -
  J4854_RS03255 (J4854_03255) - 616350..617534 (-) 1185 WP_200772217.1 DUF2974 domain-containing protein -
  J4854_RS03260 (J4854_03260) - 617681..618358 (+) 678 WP_200772218.1 response regulator transcription factor -
  J4854_RS03265 (J4854_03265) - 618351..619325 (+) 975 WP_200772219.1 sensor histidine kinase -
  J4854_RS10415 - 619440..619568 (+) 129 WP_267910309.1 hypothetical protein -
  J4854_RS03270 (J4854_03270) - 619584..620342 (+) 759 WP_004219620.1 ABC transporter ATP-binding protein -
  J4854_RS03275 (J4854_03275) - 620343..622328 (+) 1986 WP_200772220.1 FtsX-like permease family protein -
  J4854_RS03280 (J4854_03280) - 622470..622727 (+) 258 WP_200772221.1 SemiSWEET family transporter -
  J4854_RS03285 (J4854_03285) - 622957..623364 (+) 408 WP_200772222.1 YbgA family protein -
  J4854_RS03290 (J4854_03290) - 623365..623730 (+) 366 WP_200772223.1 TIGR02328 family protein -
  J4854_RS03295 (J4854_03295) - 623938..627000 (+) 3063 WP_200772224.1 type I restriction endonuclease -
  J4854_RS03300 (J4854_03300) - 627000..628604 (+) 1605 WP_200772225.1 HsdM family class I SAM-dependent methyltransferase -
  J4854_RS03305 (J4854_03305) - 628597..629859 (+) 1263 WP_200772226.1 restriction endonuclease subunit S -
  J4854_RS03310 (J4854_03310) - 629888..630583 (+) 696 WP_200772227.1 hypothetical protein -
  J4854_RS03315 (J4854_03315) - 630583..632868 (+) 2286 WP_200772228.1 DEAD/DEAH box helicase -
  J4854_RS03320 (J4854_03320) - 633126..633875 (+) 750 WP_200772229.1 DNA-entry nuclease -
  J4854_RS03325 (J4854_03325) - 634017..634277 (+) 261 Protein_608 HigA family addiction module antitoxin -
  J4854_RS03330 (J4854_03330) - 634416..635291 (+) 876 WP_200772231.1 Rpn family recombination-promoting nuclease/putative transposase -
  J4854_RS03335 (J4854_03335) - 635444..636367 (+) 924 WP_200772232.1 L-lactate dehydrogenase -
  J4854_RS03340 (J4854_03340) - 636867..637469 (+) 603 WP_200772233.1 nitroreductase family protein -
  J4854_RS03345 (J4854_03345) - 637614..638309 (-) 696 WP_200772234.1 VIT1/CCC1 transporter family protein -
  J4854_RS03350 (J4854_03350) - 638511..639803 (+) 1293 WP_200772235.1 PTS transporter subunit EIIC -
  J4854_RS03355 (J4854_03355) - 639790..640647 (+) 858 WP_200772236.1 alpha/beta hydrolase -
  J4854_RS03360 (J4854_03360) - 640731..641849 (+) 1119 WP_200772237.1 DUF4767 domain-containing protein -
  J4854_RS03365 (J4854_03365) - 642064..642618 (+) 555 WP_200772238.1 hypothetical protein -
  J4854_RS03370 (J4854_03370) - 642798..643565 (+) 768 WP_200772239.1 ABC transporter ATP-binding protein -
  J4854_RS03375 (J4854_03375) - 643558..645561 (+) 2004 WP_200772240.1 FtsX-like permease family protein -
  J4854_RS03380 (J4854_03380) amiA 645977..647941 (-) 1965 WP_200772241.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS03385 (J4854_03385) - 648201..648518 (+) 318 WP_200772242.1 PadR family transcriptional regulator -
  J4854_RS03390 (J4854_03390) - 648524..649324 (+) 801 WP_200772243.1 hypothetical protein -
  J4854_RS03395 (J4854_03395) - 649321..650151 (+) 831 WP_200772244.1 hypothetical protein -
  J4854_RS03400 (J4854_03400) - 650411..650647 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  J4854_RS03405 (J4854_03405) - 650640..651338 (+) 699 WP_200772245.1 3-oxoacyl-ACP reductase -
  J4854_RS03410 (J4854_03410) - 651348..651827 (+) 480 WP_200772246.1 NUDIX hydrolase -
  J4854_RS03415 (J4854_03415) - 651835..652563 (+) 729 WP_200772247.1 GNAT family N-acetyltransferase -
  J4854_RS03420 (J4854_03420) - 652605..653507 (+) 903 WP_200772248.1 putative PEP-binding protein -
  J4854_RS03425 (J4854_03425) - 653449..653889 (+) 441 WP_200772249.1 ASCH domain-containing protein -
  J4854_RS03430 (J4854_03430) - 654277..655494 (-) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  J4854_RS03435 (J4854_03435) - 655576..655779 (-) 204 WP_000814511.1 excisionase -
  J4854_RS10350 - 655763..656014 (+) 252 WP_001845478.1 hypothetical protein -
  J4854_RS03440 (J4854_03440) - 656240..656470 (-) 231 WP_000857133.1 helix-turn-helix domain-containing protein -
  J4854_RS03445 (J4854_03445) - 656467..656889 (-) 423 WP_000804885.1 sigma-70 family RNA polymerase sigma factor -
  J4854_RS03450 (J4854_03450) - 657394..657747 (+) 354 WP_001227347.1 helix-turn-helix transcriptional regulator -
  J4854_RS03455 (J4854_03455) - 657807..657974 (-) 168 WP_000336323.1 cysteine-rich KTR domain-containing protein -
  J4854_RS03460 (J4854_03460) tet(M) 658093..660012 (-) 1920 WP_200772250.1 tetracycline resistance ribosomal protection protein Tet(M) -
  J4854_RS10465 - 660028..660075 (-) 48 Protein_637 hypothetical protein -
  J4854_RS03470 (J4854_03470) - 660389..661324 (-) 936 WP_001863540.1 conjugal transfer protein -
  J4854_RS03475 (J4854_03475) - 661321..662322 (-) 1002 WP_000769868.1 lysozyme family protein -
  J4854_RS03480 (J4854_03480) - 662319..664496 (-) 2178 WP_000804748.1 CD3337/EF1877 family mobilome membrane protein -
  J4854_RS03485 (J4854_03485) - 664499..666946 (-) 2448 WP_000331160.1 ATP-binding protein -
  J4854_RS03490 (J4854_03490) - 666930..667322 (-) 393 WP_000723888.1 conjugal transfer protein -
  J4854_RS03495 (J4854_03495) - 667411..667908 (-) 498 WP_000342539.1 antirestriction protein ArdA -
  J4854_RS03500 (J4854_03500) - 668025..668246 (-) 222 WP_200772251.1 hypothetical protein -
  J4854_RS03505 (J4854_03505) mobT 668289..669494 (-) 1206 WP_000398284.1 MobT family relaxase -
  J4854_RS03510 (J4854_03510) - 669517..669669 (-) 153 WP_000879507.1 hypothetical protein -
  J4854_RS03515 (J4854_03515) - 669672..671057 (-) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  J4854_RS03520 (J4854_03520) - 671086..671472 (-) 387 WP_000985015.1 YdcP family protein -
  J4854_RS03525 (J4854_03525) - 671488..671802 (-) 315 WP_000420682.1 YdcP family protein -
  J4854_RS03530 (J4854_03530) glmU 672313..673692 (+) 1380 WP_200772252.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  J4854_RS03535 (J4854_03535) - 673702..674247 (+) 546 WP_200772253.1 NUDIX hydrolase -
  J4854_RS03540 (J4854_03540) macP 674259..674594 (+) 336 WP_200772254.1 cell wall synthase accessory phosphoprotein MacP -
  J4854_RS03545 (J4854_03545) - 674619..675311 (+) 693 WP_200772255.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  J4854_RS03550 (J4854_03550) nth 675446..676069 (+) 624 WP_200772256.1 endonuclease III -
  J4854_RS03555 (J4854_03555) amiA3 676476..678443 (+) 1968 WP_200772257.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS03560 (J4854_03560) - 678635..679021 (-) 387 WP_200772258.1 bleomycin resistance protein -
  J4854_RS03565 (J4854_03565) - 679033..679860 (-) 828 WP_200772259.1 exodeoxyribonuclease III -
  J4854_RS03570 (J4854_03570) - 679996..680448 (+) 453 WP_200772260.1 DUF3290 family protein -
  J4854_RS03575 (J4854_03575) - 680445..681077 (+) 633 WP_200772261.1 DUF421 domain-containing protein -
  J4854_RS03580 (J4854_03580) pbp2b 681216..683267 (+) 2052 WP_200772262.1 penicillin-binding protein PBP2B -
  J4854_RS03585 (J4854_03585) recR 683278..683874 (+) 597 WP_187540902.1 recombination mediator RecR -
  J4854_RS03590 (J4854_03590) - 683951..684997 (+) 1047 WP_200772263.1 D-alanine--D-alanine ligase -
  J4854_RS03595 (J4854_03595) - 685270..686640 (+) 1371 WP_200772264.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  J4854_RS03600 (J4854_03600) - 686630..687241 (+) 612 WP_200772265.1 NUDIX hydrolase -
  J4854_RS03605 (J4854_03605) - 687272..687967 (+) 696 WP_187540906.1 TIGR02206 family membrane protein -
  J4854_RS03610 (J4854_03610) - 687977..688657 (+) 681 WP_200772266.1 TIGR02206 family membrane protein -
  J4854_RS03615 (J4854_03615) - 688714..690639 (+) 1926 WP_200772267.1 DUF2207 domain-containing protein -

Sequence


Protein


Download         Length: 654 a.a.        Molecular weight: 72539.76 Da        Isoelectric Point: 5.8412

>NTDB_id=552041 J4854_RS03380 WP_200772241.1 645977..647941(-) (amiA) [Streptococcus lactarius strain CCUG 66490]
MKKSKLALLAGVAAASTLFLAACGSSSNSSNGTTYKYVYSTDPDTLNYLTSNRSTTSDITTNLVDGLFENDQYGNLIPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAKDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTSTMMPVNAKFLESAGKDFGSVKPTGILYNGPYIMKSFTSKSQIELDKNPNYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLTSARLFPTSSTYSTIQKKFKDNIIYTQQDATVYYAYFNVNRQNYGHTSKKS
DEQKNSTKTALQNKDFRQALNFALDRTSYSAQSNGKEAATKTLRSLLVPPTFVQANGKDFGTLVEEKLATAGDEWKGVSF
ADAQDSLHNTDKAKAELEKAKAALQSQGVQFPIHIDYVVDQSSNPIVQQADSMKNSIETALGKDNVVIDVQKLSTDDADN
ATYFAQSPEQKDFDLDIGGWGPDFQDPSTYLDILSPVDGPTLTGMGLDPKKDQALIEKLGLNEYKQLLDDANAEKLDTNK
RYEKYAAAQAWLTENAIVLPIYSKGGVPSITKVTPFSSPNSLVGIKGDTNYFKYKKVQDKTVTTADYEKAYKQWLKDKAE
SNKKAQADLAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=552041 J4854_RS03380 WP_200772241.1 645977..647941(-) (amiA) [Streptococcus lactarius strain CCUG 66490]
ATGAAAAAATCTAAGCTTGCTCTCTTAGCAGGTGTAGCCGCAGCATCAACACTTTTCCTTGCTGCTTGTGGTTCATCTTC
TAATTCATCAAATGGGACAACCTATAAATATGTTTATAGTACTGACCCTGATACCTTGAATTATTTGACTTCAAACCGTT
CAACAACTAGTGATATCACTACTAACTTGGTTGATGGTTTGTTCGAAAATGACCAATATGGTAACTTGATTCCTGCCCTT
GCGGAAGACTGGTCTGTTTCTAAAGACGGTTTGACTTATACCTACAAGCTTCGTAAAGATGCGAAGTGGTATGACTCAGA
AGGAAACGAATACGCAGATGTAACTGCAAAAGACTTCGTTACTTCTCTTAAATACGTTGCAGATAAAAAATCTGACGCCC
TTTACTTGGTTCAAAATTCTGTCAAAGGATTGGATGACTACGTAAATGGTAAGACTAAAGACTTCTCAACAGTTGGTGTC
AAAGCCGTTGACGATCATACTCTTCAATACACTTTGAACCAACCAGAATCATTCTGGAATTCTAAATTGACGACTTCTAC
TATGATGCCAGTTAATGCGAAATTCCTTGAATCAGCTGGTAAAGACTTTGGTAGCGTGAAACCAACAGGAATCCTCTACA
ACGGTCCATACATTATGAAGTCCTTCACTTCAAAATCACAAATTGAGTTGGACAAAAACCCTAACTACTACGACAAGAAA
AATGTTCACATCGACACTGTCAAATTGACTTACTTCGATGGATCAGACCAAGACTATCTTGCTCGTAACTTCTCAGACGG
TAACTTAACTTCTGCTCGTCTCTTCCCTACAAGCTCTACATACAGTACAATCCAAAAGAAATTCAAAGATAACATTATCT
ATACTCAACAAGATGCTACTGTATACTATGCTTACTTCAACGTAAACCGTCAAAACTACGGTCACACTTCAAAGAAATCT
GACGAACAAAAGAATAGCACTAAGACAGCTCTTCAAAACAAAGACTTCCGTCAAGCATTGAACTTTGCTTTGGACAGAAC
TTCATACAGTGCCCAATCAAACGGTAAAGAAGCAGCAACGAAAACTCTTCGTTCCCTTCTTGTTCCTCCAACATTTGTGC
AAGCAAACGGTAAAGACTTCGGTACTCTCGTCGAAGAAAAACTTGCTACAGCTGGAGACGAATGGAAAGGTGTAAGCTTT
GCCGATGCTCAAGACAGCTTGCATAACACTGATAAAGCGAAAGCTGAACTTGAAAAAGCAAAAGCTGCATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTACGTTGTTGACCAATCTTCAAACCCTATTGTTCAACAAGCAGACTCAATGA
AGAACTCTATTGAAACTGCCCTTGGTAAAGACAATGTTGTGATCGATGTTCAAAAATTGTCTACTGATGATGCGGACAAC
GCTACATACTTTGCACAATCACCAGAACAAAAAGACTTTGACTTAGACATCGGTGGTTGGGGACCTGACTTCCAAGACCC
TTCTACTTACCTTGACATTTTGAGCCCAGTAGATGGTCCAACATTGACTGGTATGGGTCTTGATCCTAAGAAAGACCAAG
CTCTTATCGAAAAACTTGGTTTGAACGAATACAAACAATTGCTTGATGATGCAAATGCTGAAAAATTGGATACCAATAAA
CGTTATGAAAAATACGCTGCTGCACAAGCTTGGTTGACAGAAAACGCAATTGTTCTTCCTATCTACTCTAAAGGTGGTGT
TCCATCTATCACTAAAGTAACTCCATTCTCATCACCAAATTCATTGGTTGGTATTAAAGGAGATACAAACTACTTCAAGT
ACAAGAAAGTACAAGATAAGACCGTTACAACTGCTGACTACGAAAAAGCTTACAAACAATGGCTCAAAGATAAAGCAGAG
TCAAACAAGAAAGCTCAAGCAGATCTTGCAAAACACGTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.566

  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.564

  amiA3 Streptococcus thermophilus LMD-9

55.994

100

0.564