Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   J4854_RS03555 Genome accession   NZ_CP072329
Coordinates   676476..678443 (+) Length   655 a.a.
NCBI ID   WP_200772257.1    Uniprot ID   A0A9X1BCD5
Organism   Streptococcus lactarius strain CCUG 66490     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 671476..683443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03525 (J4854_03525) - 671488..671802 (-) 315 WP_000420682.1 YdcP family protein -
  J4854_RS03530 (J4854_03530) glmU 672313..673692 (+) 1380 WP_200772252.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  J4854_RS03535 (J4854_03535) - 673702..674247 (+) 546 WP_200772253.1 NUDIX hydrolase -
  J4854_RS03540 (J4854_03540) macP 674259..674594 (+) 336 WP_200772254.1 cell wall synthase accessory phosphoprotein MacP -
  J4854_RS03545 (J4854_03545) - 674619..675311 (+) 693 WP_200772255.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  J4854_RS03550 (J4854_03550) nth 675446..676069 (+) 624 WP_200772256.1 endonuclease III -
  J4854_RS03555 (J4854_03555) amiA3 676476..678443 (+) 1968 WP_200772257.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS03560 (J4854_03560) - 678635..679021 (-) 387 WP_200772258.1 bleomycin resistance protein -
  J4854_RS03565 (J4854_03565) - 679033..679860 (-) 828 WP_200772259.1 exodeoxyribonuclease III -
  J4854_RS03570 (J4854_03570) - 679996..680448 (+) 453 WP_200772260.1 DUF3290 family protein -
  J4854_RS03575 (J4854_03575) - 680445..681077 (+) 633 WP_200772261.1 DUF421 domain-containing protein -
  J4854_RS03580 (J4854_03580) pbp2b 681216..683267 (+) 2052 WP_200772262.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72171.46 Da        Isoelectric Point: 6.0671

>NTDB_id=552042 J4854_RS03555 WP_200772257.1 676476..678443(+) (amiA3) [Streptococcus lactarius strain CCUG 66490]
MKAKRLLALAGVSIAGAFLLAACGGGSSKQATYSFVYSADPNTLDYITATRTTTSDITSNLVDGLLENDQYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGKVTAQDFVTGIQHAVAAKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNAKFLESQGKDFGSLKPSSILYNGPYYLKSLTSKSEIELVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKGFEKGQYSFAGVMPNSSTYKNVKKNFGNNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFAFDRKSYAAQVSGSDAAEKTLRSTLVPPTYVQINGEDFGKAVEKQLVTYGDQWKGVSLED
GQTSLYNPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDSSMVQQASSFKQSVESTLGAENVVVDLQKVSDDDFQNIT
YFSDNAAARDYDISGGGWQPDYQDPSTYLESISPVNGSVSYYLGIDAGSNNPAIAAVGLDQYANMLKDADAELLDQAKRY
EKYATAQAWLTDSSITLPTVSNGGAPMLQRTVPYSRASSWVGTKGTGSNYKYLKLTDDVVTTKEFDKAKETWLKEKAKSN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=552042 J4854_RS03555 WP_200772257.1 676476..678443(+) (amiA3) [Streptococcus lactarius strain CCUG 66490]
ATGAAAGCAAAAAGACTGTTAGCTCTTGCAGGAGTTTCTATTGCAGGTGCTTTTCTCTTAGCAGCATGTGGCGGTGGTAG
TAGTAAACAAGCAACCTACTCGTTTGTTTATTCGGCTGATCCAAATACCTTGGATTACATTACAGCGACTCGTACAACAA
CTTCAGATATCACTAGTAACCTGGTGGATGGTCTTCTTGAAAATGACCAATACGGGAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACCTACAAACTTCGTAAAGATGCCAAATGGTATACCAGCGAAGGGGA
AGAGTATGGAAAAGTAACGGCTCAAGACTTCGTAACAGGGATCCAACATGCCGTCGCAGCAAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCTTACGTCAAAGGGGAAACCAAGGACTTTAATACCGTCGGAGTGAAAGCT
TTAGATGACCACACCATCCAATATACCTTGGTCCGTCCAGAAAGCTTCTGGAACTCCAAAACAACTTCAGGTGTTCTTTT
CCCAGTTAATGCTAAGTTCTTGGAATCTCAAGGAAAAGATTTTGGTTCCTTGAAACCTAGCAGCATCTTGTACAATGGTC
CTTACTACTTGAAATCATTAACTTCTAAATCTGAAATCGAGTTGGTGAAAAACAAAGACTATTACGATGCTAAAAATGTT
CACATTGACAATGTTAAATTGACCTTCAATGATGGATCAAACCCAGATTCAATTATCAAAGGCTTTGAAAAAGGTCAATA
CTCCTTTGCGGGTGTAATGCCAAACAGCTCTACTTATAAGAATGTGAAGAAGAACTTTGGCAACAATATCGTCTATGGCT
TGCAACTGGGTACTTCTTACTATCTTGGTTTTAACTTGGATCGTCAAAAGTATGATCACACCGCTAAAACAACAGATGAG
CAAAAAGCTTCTACCAAGAAAGCTATCTTGAACAAGGACTTCCGTCAAGCAGTGAACTTTGCCTTTGACCGTAAATCGTA
TGCGGCGCAAGTTTCAGGTTCAGATGCTGCTGAGAAGACTCTTCGTAGCACTTTGGTACCCCCAACTTATGTCCAAATCA
ATGGAGAAGACTTTGGAAAAGCCGTTGAAAAACAATTGGTGACTTATGGAGATCAATGGAAGGGTGTTAGCCTAGAAGAT
GGTCAAACAAGCCTCTATAATCCTGAAAAGGCCAAAGCTTCATTTGCCAAAGCCAAAGCTGAATTGCAAAAACAAGGGGT
TCAATTCCCGATCCATTTGGACTACATTGTCAGCCAAGTGGACAGCAGCATGGTCCAACAAGCTAGCTCCTTCAAACAGT
CTGTAGAATCAACCCTTGGTGCGGAAAATGTTGTGGTGGATCTTCAAAAAGTATCAGATGATGATTTCCAAAACATCACC
TACTTCAGTGATAATGCAGCAGCTAGAGACTATGATATCTCAGGTGGCGGATGGCAACCAGACTATCAAGACCCATCAAC
TTATCTTGAAAGTATCAGTCCAGTGAACGGTTCCGTTTCATACTATCTTGGTATTGATGCAGGATCAAACAACCCAGCCA
TCGCAGCAGTTGGCTTGGATCAGTACGCGAATATGTTAAAAGATGCGGATGCTGAATTATTGGATCAAGCAAAACGCTAT
GAAAAATATGCTACAGCCCAAGCTTGGTTGACAGATAGTTCCATTACGCTTCCAACCGTTTCAAATGGTGGAGCACCAAT
GCTTCAACGGACAGTACCATATAGCCGTGCTTCTTCCTGGGTTGGTACAAAAGGAACAGGAAGTAACTACAAATATCTGA
AATTGACCGATGATGTAGTGACCACAAAAGAATTTGATAAGGCCAAGGAAACTTGGTTGAAAGAAAAAGCCAAATCCAAT
AAAAAAGCCCAAGAAGATCTTAAAGATCATATCGAAAAGAAAAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.191

100

0.534
  amiA3 Streptococcus thermophilus LMG 18311

53.04

100

0.533
  amiA Streptococcus salivarius strain HSISS4

52.359

100

0.525