Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   J4854_RS03035 Genome accession   NZ_CP072329
Coordinates   571883..572542 (-) Length   219 a.a.
NCBI ID   WP_200772185.1    Uniprot ID   A0A9X1BCB1
Organism   Streptococcus lactarius strain CCUG 66490     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566883..577542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03015 (J4854_03015) - 568083..568658 (+) 576 WP_200772182.1 YutD family protein -
  J4854_RS03020 (J4854_03020) rlmN 568662..569750 (+) 1089 WP_200772183.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  J4854_RS03025 (J4854_03025) - 569737..570261 (+) 525 WP_200772332.1 VanZ family protein -
  J4854_RS03030 (J4854_03030) trpB 570689..571876 (+) 1188 WP_200772184.1 tryptophan synthase subunit beta -
  J4854_RS03035 (J4854_03035) cclA/cilC 571883..572542 (-) 660 WP_200772185.1 prepilin peptidase Machinery gene
  J4854_RS03040 (J4854_03040) - 572622..572846 (+) 225 WP_200772186.1 YqgQ family protein -
  J4854_RS03045 (J4854_03045) - 572846..573226 (+) 381 WP_200772187.1 rhodanese-like domain-containing protein -
  J4854_RS03050 (J4854_03050) - 573308..573541 (+) 234 WP_187540816.1 hypothetical protein -
  J4854_RS03055 (J4854_03055) - 573576..574298 (-) 723 WP_200772188.1 16S rRNA pseudouridine(516) synthase -
  J4854_RS03060 (J4854_03060) typA 574477..576324 (+) 1848 WP_200772189.1 translational GTPase TypA -
  J4854_RS03065 (J4854_03065) - 576351..576617 (+) 267 WP_187540819.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24960.10 Da        Isoelectric Point: 8.1777

>NTDB_id=552039 J4854_RS03035 WP_200772185.1 571883..572542(-) (cclA/cilC) [Streptococcus lactarius strain CCUG 66490]
MMNFYFFTVGTCMASFLGLVVDRFPNQSILVPRSHCAQCLHVLGFWDLIPIASQIFHRFRCRYCHQTYPVWYCLFEAWSG
LLFLACVNGFLSLPQLLTLLGTAVLAIYDLRSMEYPLMIWCCLHALVLLFSGGNLLMLVFVLLAIGAHFFFVGMGAGDFL
LLATFSLTFSSTKILWLIQIASAFGILVFVLKKERDRIPFVPCLFLSYHALLLFTMFSK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=552039 J4854_RS03035 WP_200772185.1 571883..572542(-) (cclA/cilC) [Streptococcus lactarius strain CCUG 66490]
ATGATGAACTTTTATTTTTTTACCGTCGGTACTTGTATGGCCTCGTTTCTAGGCCTGGTTGTTGATCGCTTCCCAAATCA
ATCCATTCTAGTTCCCCGCAGTCACTGCGCTCAGTGCCTGCACGTTCTTGGATTTTGGGATCTGATTCCTATTGCCTCAC
AAATCTTCCATCGTTTCCGTTGCCGCTATTGCCATCAGACCTATCCTGTTTGGTATTGTCTTTTTGAAGCCTGGAGTGGA
CTGCTCTTTTTAGCCTGTGTCAATGGCTTTCTTTCTCTTCCTCAACTCTTGACCCTACTCGGTACAGCTGTTTTAGCCAT
CTATGACCTTCGCTCTATGGAATACCCCTTGATGATCTGGTGCTGTCTCCATGCTCTGGTCCTTCTTTTTTCAGGAGGCA
ATCTCCTTATGCTAGTCTTTGTCCTCCTTGCGATCGGTGCCCATTTTTTCTTCGTCGGAATGGGAGCGGGGGATTTTCTC
CTACTCGCTACCTTCTCACTGACCTTCTCTTCTACCAAGATTCTCTGGCTCATTCAGATCGCTTCTGCCTTTGGGATACT
CGTCTTTGTTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCTTGTCTCTTTCTCAGTTATCATGCTCTACTGCTGT
TTACAATGTTTAGCAAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

55.556

94.521

0.525
  cclA/cilC Streptococcus mitis SK321

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae TIGR4

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae Rx1

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae D39

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae R6

54.106

94.521

0.511