Detailed information NTG0055178

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: B938_RS16610
• Genome accession: NC_019842
• Coordinates: 3417287..3418450 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis AS43.3
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3412287..3423450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B938_RS16580 (B938_16735)	-	3412552..3412971 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
B938_RS16585 (B938_16740)	comFC	3413045..3413734 (-)	690	WP_227590194.1	double zinc ribbon domain-containing protein	Machinery gene
B938_RS16590 (B938_16745)	-	3413740..3414024 (-)	285	WP_007407481.1	late competence development ComFB family protein	-
B938_RS16595 (B938_16750)	comFA	3414082..3415467 (-)	1386	WP_015240687.1	DEAD/DEAH box helicase	Machinery gene
B938_RS16600 (B938_16755)	-	3415575..3416423 (-)	849	WP_003151387.1	DegV family protein	-
B938_RS16605 (B938_16760)	degU	3416521..3417210 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
B938_RS16610 (B938_16765)	degS	3417287..3418450 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
B938_RS16615 (B938_16770)	-	3418673..3419320 (+)	648	WP_007614107.1	YigZ family protein	-
B938_RS16620 (B938_16775)	-	3419325..3420575 (+)	1251	WP_015240688.1	LCP family protein	-
B938_RS16625 (B938_16780)	-	3420674..3421750 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
B938_RS16630 (B938_16785)	tuaH	3421883..3423078 (-)	1196	Protein_3277	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=55178 B938_RS16610 WP_007407484.1 3417287..3418450(-) (degS) [Bacillus velezensis AS43.3]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=55178 B938_RS16610 WP_007407484.1 3417287..3418450(-) (degS) [Bacillus velezensis AS43.3]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951