Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B938_RS16585 Genome accession   NC_019842
Coordinates   3413045..3413734 (-) Length   229 a.a.
NCBI ID   WP_227590194.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408045..3418734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS16550 (B938_16705) fliW 3408136..3408567 (-) 432 WP_015240684.1 flagellar assembly protein FliW -
  B938_RS16555 (B938_16710) - 3408597..3409166 (-) 570 WP_007407476.1 DUF6470 family protein -
  B938_RS16560 (B938_16715) flgL 3409257..3410174 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  B938_RS16565 (B938_16720) flgK 3410186..3411703 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  B938_RS16570 (B938_16725) - 3411719..3412201 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B938_RS16575 (B938_16730) flgM 3412216..3412482 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B938_RS16580 (B938_16735) - 3412552..3412971 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  B938_RS16585 (B938_16740) comFC 3413045..3413734 (-) 690 WP_227590194.1 double zinc ribbon domain-containing protein Machinery gene
  B938_RS16590 (B938_16745) - 3413740..3414024 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B938_RS16595 (B938_16750) comFA 3414082..3415467 (-) 1386 WP_015240687.1 DEAD/DEAH box helicase Machinery gene
  B938_RS16600 (B938_16755) - 3415575..3416423 (-) 849 WP_003151387.1 DegV family protein -
  B938_RS16605 (B938_16760) degU 3416521..3417210 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B938_RS16610 (B938_16765) degS 3417287..3418450 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25308.01 Da        Isoelectric Point: 8.2921

>NTDB_id=55175 B938_RS16585 WP_227590194.1 3413045..3413734(-) (comFC) [Bacillus velezensis AS43.3]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVFSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=55175 B938_RS16585 WP_227590194.1 3413045..3413734(-) (comFC) [Bacillus velezensis AS43.3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTTCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment