Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   B938_RS16595 Genome accession   NC_019842
Coordinates   3414082..3415467 (-) Length   461 a.a.
NCBI ID   WP_015240687.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3409082..3420467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS16560 (B938_16715) flgL 3409257..3410174 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  B938_RS16565 (B938_16720) flgK 3410186..3411703 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  B938_RS16570 (B938_16725) - 3411719..3412201 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B938_RS16575 (B938_16730) flgM 3412216..3412482 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B938_RS16580 (B938_16735) - 3412552..3412971 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  B938_RS16585 (B938_16740) comFC 3413045..3413734 (-) 690 WP_227590194.1 double zinc ribbon domain-containing protein Machinery gene
  B938_RS16590 (B938_16745) - 3413740..3414024 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B938_RS16595 (B938_16750) comFA 3414082..3415467 (-) 1386 WP_015240687.1 DEAD/DEAH box helicase Machinery gene
  B938_RS16600 (B938_16755) - 3415575..3416423 (-) 849 WP_003151387.1 DegV family protein -
  B938_RS16605 (B938_16760) degU 3416521..3417210 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B938_RS16610 (B938_16765) degS 3417287..3418450 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B938_RS16615 (B938_16770) - 3418673..3419320 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52602.00 Da        Isoelectric Point: 10.2711

>NTDB_id=55176 B938_RS16595 WP_015240687.1 3414082..3415467(-) (comFA) [Bacillus velezensis AS43.3]
MSEGASEFSEVRDFFFGRHLLRSEVPFSDHHIKRVTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=55176 B938_RS16595 WP_015240687.1 3414082..3415467(-) (comFA) [Bacillus velezensis AS43.3]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTTCGGCCGGCATTTATTGAGATCTGAGGTACCGTT
TTCAGATCATCACATCAAGCGTGTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGATAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACATCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTCACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment