Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B938_RS16605 Genome accession   NC_019842
Coordinates   3416521..3417210 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis AS43.3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3411521..3422210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS16570 (B938_16725) - 3411719..3412201 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B938_RS16575 (B938_16730) flgM 3412216..3412482 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B938_RS16580 (B938_16735) - 3412552..3412971 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  B938_RS16585 (B938_16740) comFC 3413045..3413734 (-) 690 WP_227590194.1 double zinc ribbon domain-containing protein Machinery gene
  B938_RS16590 (B938_16745) - 3413740..3414024 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B938_RS16595 (B938_16750) comFA 3414082..3415467 (-) 1386 WP_015240687.1 DEAD/DEAH box helicase Machinery gene
  B938_RS16600 (B938_16755) - 3415575..3416423 (-) 849 WP_003151387.1 DegV family protein -
  B938_RS16605 (B938_16760) degU 3416521..3417210 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B938_RS16610 (B938_16765) degS 3417287..3418450 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B938_RS16615 (B938_16770) - 3418673..3419320 (+) 648 WP_007614107.1 YigZ family protein -
  B938_RS16620 (B938_16775) - 3419325..3420575 (+) 1251 WP_015240688.1 LCP family protein -
  B938_RS16625 (B938_16780) - 3420674..3421750 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=55177 B938_RS16605 WP_003219701.1 3416521..3417210(-) (degU) [Bacillus velezensis AS43.3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=55177 B938_RS16605 WP_003219701.1 3416521..3417210(-) (degU) [Bacillus velezensis AS43.3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment