Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J6I88_RS17430 Genome accession   NZ_CP072305
Coordinates   3637238..3638368 (+) Length   376 a.a.
NCBI ID   WP_049594893.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3632238..3643368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS17405 (J6I88_17405) - 3632537..3632743 (-) 207 WP_000182543.1 hypothetical protein -
  J6I88_RS17410 (J6I88_17410) - 3632797..3634872 (-) 2076 WP_001120672.1 TonB-dependent copper receptor -
  J6I88_RS17415 (J6I88_17415) - 3634945..3635373 (-) 429 WP_000231981.1 DUF2946 family protein -
  J6I88_RS17420 (J6I88_17420) def 3635410..3635940 (-) 531 WP_001196539.1 peptide deformylase -
  J6I88_RS17425 (J6I88_17425) tsaP 3636063..3637217 (+) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J6I88_RS17430 (J6I88_17430) dprA 3637238..3638368 (+) 1131 WP_049594893.1 DNA-processing protein DprA Machinery gene
  J6I88_RS17435 (J6I88_17435) - 3638419..3638988 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  J6I88_RS17440 (J6I88_17440) - 3639380..3640300 (-) 921 WP_000084546.1 DMT family transporter -
  J6I88_RS17445 (J6I88_17445) - 3640406..3641056 (-) 651 WP_098729712.1 TetR/AcrR family transcriptional regulator -
  J6I88_RS17450 (J6I88_17450) - 3641193..3642407 (+) 1215 WP_000372838.1 MFS transporter -
  J6I88_RS17455 (J6I88_17455) - 3642429..3643193 (+) 765 WP_000786957.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41844.38 Da        Isoelectric Point: 6.4984

>NTDB_id=551772 J6I88_RS17430 WP_049594893.1 3637238..3638368(+) (dprA) [Acinetobacter baumannii strain KSK Sensitive]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=551772 J6I88_RS17430 WP_049594893.1 3637238..3638368(+) (dprA) [Acinetobacter baumannii strain KSK Sensitive]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGCTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baumannii strain A118

97.872

100

0.979

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38