Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J6342_RS05005 Genome accession   NZ_CP072196
Coordinates   1041500..1042153 (-) Length   217 a.a.
NCBI ID   WP_038693798.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190604J2-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036500..1047153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6342_RS04990 (J6342_04990) - 1037315..1038397 (-) 1083 WP_014938012.1 serine hydrolase -
  J6342_RS04995 (J6342_04995) - 1038509..1040164 (-) 1656 WP_014938011.1 ribonucleoside-diphosphate reductase subunit alpha -
  J6342_RS05000 (J6342_05000) - 1040215..1041189 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  J6342_RS05005 (J6342_05005) comF 1041500..1042153 (-) 654 WP_038693798.1 ComF family protein Machinery gene
  J6342_RS05015 (J6342_05015) - 1042380..1042931 (-) 552 WP_014938008.1 hypothetical protein -
  J6342_RS05020 (J6342_05020) - 1042983..1043633 (-) 651 WP_014938007.1 HD domain-containing protein -
  J6342_RS05025 (J6342_05025) gdhA 1043765..1045123 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  J6342_RS05030 (J6342_05030) dprA 1045307..1046410 (-) 1104 WP_014938005.1 DNA-processing protein DprA Machinery gene
  J6342_RS05035 (J6342_05035) - 1046413..1046790 (-) 378 WP_014938004.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25329.43 Da        Isoelectric Point: 9.4150

>NTDB_id=551073 J6342_RS05005 WP_038693798.1 1041500..1042153(-) (comF) [Riemerella anatipestifer strain 20190604J2-1]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=551073 J6342_RS05005 WP_038693798.1 1041500..1042153(-) (comF) [Riemerella anatipestifer strain 20190604J2-1]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

89.401

100

0.894