Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUZ08_RS02345 Genome accession   NZ_CP089489
Coordinates   409967..410569 (+) Length   200 a.a.
NCBI ID   WP_000271554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1174_IV_ST22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404967..415569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ08_RS02305 - 405050..405169 (+) 120 WP_000840602.1 hypothetical protein -
  LUZ08_RS02310 mreC 405369..406211 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUZ08_RS02315 mreD 406211..406741 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUZ08_RS02320 rplU 406908..407216 (+) 309 WP_000457385.1 50S ribosomal protein L21 -
  LUZ08_RS02325 - 407222..407542 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUZ08_RS02330 rpmA 407554..407838 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUZ08_RS02335 obgE 408193..409485 (+) 1293 WP_000496100.1 GTPase ObgE -
  LUZ08_RS02340 - 409498..409953 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LUZ08_RS02345 ruvA 409967..410569 (+) 603 WP_000271554.1 Holliday junction branch migration protein RuvA Machinery gene
  LUZ08_RS02350 ruvB 410601..411605 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUZ08_RS02355 queA 411607..412632 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUZ08_RS02360 tgt 412655..413794 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUZ08_RS02365 yajC 413813..414073 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22193.35 Da        Isoelectric Point: 5.6622

>NTDB_id=550926 LUZ08_RS02345 WP_000271554.1 409967..410569(+) (ruvA) [Staphylococcus aureus strain E1174_IV_ST22]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYSFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550926 LUZ08_RS02345 WP_000271554.1 409967..410569(+) (ruvA) [Staphylococcus aureus strain E1174_IV_ST22]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATAGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425