Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J5284_RS14600 Genome accession   NZ_CP072172
Coordinates   2986844..2987404 (-) Length   186 a.a.
NCBI ID   WP_069612300.1    Uniprot ID   A0A1E4YDF3
Organism   Rhizobium sp. AB2/73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2981844..2992404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5284_RS14585 (J5284_14590) - 2982098..2982988 (+) 891 WP_069612166.1 NAD(P)-dependent oxidoreductase -
  J5284_RS14590 (J5284_14595) gyrA 2983139..2985934 (-) 2796 WP_069612165.1 DNA gyrase subunit A -
  J5284_RS14595 (J5284_14600) - 2986159..2986791 (+) 633 WP_069612164.1 MarC family protein -
  J5284_RS14600 (J5284_14605) ssb 2986844..2987404 (-) 561 WP_069612300.1 single-stranded DNA-binding protein Machinery gene
  J5284_RS14605 (J5284_14610) uvrA 2987676..2990597 (+) 2922 WP_069612163.1 excinuclease ABC subunit UvrA -
  J5284_RS14610 (J5284_14615) - 2990629..2991435 (+) 807 WP_069612162.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19733.41 Da        Isoelectric Point: 5.3534

>NTDB_id=550912 J5284_RS14600 WP_069612300.1 2986844..2987404(-) (ssb) [Rhizobium sp. AB2/73]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLNIATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWQDQNGQDRYSTEVVLQGFNSTLTMLDGRGEGGGSMEGGSRGGRGGGDFGGGYGGDYGGGDDYGQSSSQGSS
RGGGNRGGSQGGGGNFSRDLDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=550912 J5284_RS14600 WP_069612300.1 2986844..2987404(-) (ssb) [Rhizobium sp. AB2/73]
ATGGCCGGTAGTGTGAACAAGGTAATTCTGATTGGAAATCTCGGGGCGGACCCGGAAATCCGCCGCACGCAGGACGGCCG
TCCGATCGCCAACCTCAACATTGCCACGTCGGAAACCTGGCGTGACCGCAATTCCGGCGAGCGAAAGGAAAAGACTGAAT
GGCACCGCGTCGTCATCTTCAATGAAGGTCTCTGCAAGGTCGCGGAGCAGTATTTGAAGAAGGGTGCCAAGGTCTACATC
GAAGGTGCGCTGCAAACCCGCAAATGGCAGGACCAGAACGGTCAGGACCGCTACTCCACGGAAGTTGTGCTGCAGGGCTT
CAATTCGACACTGACCATGCTCGATGGTCGCGGCGAAGGCGGTGGTTCCATGGAAGGCGGCAGCCGTGGCGGCCGCGGCG
GCGGTGACTTTGGCGGCGGTTATGGCGGCGACTACGGTGGTGGCGACGATTACGGCCAGTCTTCGTCGCAAGGCTCTTCG
CGCGGCGGCGGCAATCGTGGTGGCAGCCAGGGCGGCGGCGGTAATTTCTCGCGCGATCTGGACGACGACATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E4YDF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.811

99.462

0.505
  ssb Glaesserella parasuis strain SC1401

45.263

100

0.462
  ssb Neisseria meningitidis MC58

37.895

100

0.387
  ssb Neisseria gonorrhoeae MS11

37.368

100

0.382