Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J5274_RS12470 Genome accession   NZ_CP072141
Coordinates   2532906..2533463 (+) Length   185 a.a.
NCBI ID   WP_219274614.1    Uniprot ID   -
Organism   Rhizobium sp. L51/94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2527906..2538463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5274_RS12460 (J5274_12455) - 2528860..2529669 (-) 810 WP_142822638.1 DUF72 domain-containing protein -
  J5274_RS12465 (J5274_12460) uvrA 2529733..2532657 (-) 2925 WP_142822640.1 excinuclease ABC subunit UvrA -
  J5274_RS12470 (J5274_12465) ssb 2532906..2533463 (+) 558 WP_219274614.1 single-stranded DNA-binding protein Machinery gene
  J5274_RS12475 (J5274_12470) - 2533535..2533789 (+) 255 WP_142822644.1 RDD family protein -
  J5274_RS12480 (J5274_12475) - 2533805..2534434 (-) 630 WP_142822645.1 MarC family protein -
  J5274_RS12485 (J5274_12480) gyrA 2534660..2537482 (+) 2823 WP_224127673.1 DNA gyrase subunit A -
  J5274_RS28790 - 2537655..2537789 (-) 135 WP_257623361.1 hypothetical protein -
  J5274_RS12490 (J5274_12485) - 2537829..2537984 (-) 156 WP_162854755.1 hypothetical protein -
  J5274_RS12495 (J5274_12490) - 2538116..2538298 (-) 183 WP_142822647.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19584.42 Da        Isoelectric Point: 5.3474

>NTDB_id=550871 J5274_RS12470 WP_219274614.1 2532906..2533463(+) (ssb) [Rhizobium sp. L51/94]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLNIATSETWRDKSSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQAGIEKYSTEIVLQGFNSTLTMLDGRGDGAGEGGGRVMQRSGGGGNDFGGGGSGYGDDYNQSSPSSSSG
RGNAGNAGNSGGGNFSRELDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=550871 J5274_RS12470 WP_219274614.1 2532906..2533463(+) (ssb) [Rhizobium sp. L51/94]
ATGGCGGGTAGCGTAAACAAGGTAATTCTGATCGGGAACCTCGGGGCTGATCCGGAAATCCGCCGGACCCAGGATGGTCG
CCCGATCGCCAATCTGAATATTGCAACTTCCGAAACTTGGCGGGACAAGTCGTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCAACGAGGGTCTGTGCAAGGTTGCCGAGCAGTATCTGAAGAAGGGTGCCAAGGTTTACATC
GAGGGCGCCCTGCAGACCCGCAAGTGGACGGACCAGGCCGGCATCGAGAAATACTCGACCGAAATCGTCCTTCAGGGCTT
CAACTCGACTTTGACCATGCTCGACGGTCGCGGTGACGGAGCCGGCGAAGGCGGTGGTCGCGTCATGCAGCGCAGCGGCG
GTGGCGGCAATGATTTCGGCGGCGGCGGTTCGGGCTACGGCGACGACTACAACCAGTCCTCGCCATCGTCGTCATCCGGT
CGCGGCAATGCCGGTAACGCCGGCAATAGCGGCGGCGGAAACTTCTCGCGCGAACTCGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.059

100

0.481
  ssb Vibrio cholerae strain A1552

47.826

99.459

0.476
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.395
  ssb Neisseria meningitidis MC58

37.895

100

0.389