Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J4772_RS36660 Genome accession   NZ_CP072117
Coordinates   8876345..8876860 (-) Length   171 a.a.
NCBI ID   WP_209073660.1    Uniprot ID   -
Organism   Cohnella sp. LGH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8871345..8881860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4772_RS36655 (J4772_36655) rpsR 8876001..8876324 (-) 324 WP_116060957.1 30S ribosomal protein S18 -
  J4772_RS36660 (J4772_36660) ssbA 8876345..8876860 (-) 516 WP_209073660.1 single-stranded DNA-binding protein Machinery gene
  J4772_RS36665 (J4772_36665) rpsF 8876930..8877217 (-) 288 WP_116060959.1 30S ribosomal protein S6 -
  J4772_RS36670 (J4772_36670) - 8877394..8877582 (+) 189 WP_209073661.1 YjzC family protein -
  J4772_RS36675 (J4772_36675) - 8877857..8878618 (-) 762 WP_247740957.1 N-acetylmuramoyl-L-alanine amidase -
  J4772_RS36685 (J4772_36685) - 8878865..8879086 (-) 222 WP_116060961.1 DUF951 domain-containing protein -
  J4772_RS36690 (J4772_36690) - 8879142..8880005 (-) 864 WP_209073662.1 mechanosensitive ion channel family protein -
  J4772_RS36695 (J4772_36695) - 8880025..8880270 (-) 246 WP_209073663.1 DUF3343 domain-containing protein -
  J4772_RS36700 (J4772_36700) yyaC 8880356..8880976 (+) 621 WP_116060964.1 spore protease YyaC -
  J4772_RS36705 (J4772_36705) - 8880951..8881442 (-) 492 WP_209073664.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18569.31 Da        Isoelectric Point: 4.8537

>NTDB_id=550633 J4772_RS36660 WP_209073660.1 8876345..8876860(-) (ssbA) [Cohnella sp. LGH]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRSFSGNREEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGRRVYVTEVIADNVRFLESPNREGGGGQGRDDAYGSAPAPSAGGGYGGSGSNRSNAGSQRSSGNNNDPFADDGR
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=550633 J4772_RS36660 WP_209073660.1 8876345..8876860(-) (ssbA) [Cohnella sp. LGH]
ATGCTGAACCGAGTCATTCTCATAGGACGCCTGACCAAGGACCCTGAACTGCGCTACACGCCTGCAGGAGTAGCCGTTAC
CCAATTTACGCTGGCGGTAGACCGTTCGTTCTCCGGCAATCGGGAAGAACGAGAAGCGGATTTTATTCCAGTCGTTACTT
GGAGACAGCTTGCCGAGACGTGCGCCAATTACCTTCGCAAAGGTCGTCTGGCCGCAGTGGAAGGCCGCATTCAAGTGCGC
AACTACGAGAATAACGAAGGTCGACGCGTCTATGTGACGGAAGTGATCGCCGACAACGTTCGATTCCTGGAATCGCCTAA
CCGCGAAGGCGGCGGTGGACAAGGAAGAGACGATGCTTACGGCAGCGCTCCGGCACCAAGCGCAGGAGGCGGATACGGCG
GCAGCGGTAGCAATCGCAGCAATGCCGGATCGCAGCGCAGCAGCGGCAACAATAACGATCCCTTCGCCGATGACGGGCGA
CCGATAGACATATCGGACGATGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.573
  ssb Latilactobacillus sakei subsp. sakei 23K

48.603

100

0.509
  ssb Neisseria gonorrhoeae MS11

33.871

100

0.368
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.25

65.497

0.368