Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | J6L63_RS14365 | Genome accession | NZ_CP072116 |
| Coordinates | 2867975..2868445 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain TCH32929 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2843907..2873491 | 2867975..2868445 | within | 0 |
Gene organization within MGE regions
Location: 2843907..2873491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6L63_RS14205 (J6L63_14155) | - | 2843907..2844533 (-) | 627 | WP_244777060.1 | nitroreductase family protein | - |
| J6L63_RS14210 (J6L63_14160) | - | 2844730..2845989 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| J6L63_RS14215 (J6L63_14165) | mroQ | 2846014..2846757 (-) | 744 | WP_000197630.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| J6L63_RS14220 (J6L63_14170) | groES | 2846932..2847216 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| J6L63_RS14225 (J6L63_14175) | groL | 2847292..2848908 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| J6L63_RS14230 (J6L63_14180) | - | 2849448..2850755 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| J6L63_RS14235 (J6L63_14185) | - | 2851199..2852422 (-) | 1224 | WP_244777061.1 | ArgE/DapE family deacylase | - |
| J6L63_RS14240 (J6L63_14190) | lukH | 2852858..2853913 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| J6L63_RS14245 (J6L63_14195) | lukG | 2853935..2854951 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| J6L63_RS14250 (J6L63_14200) | sph | 2855189..2856013 (-) | 825 | Protein_2768 | sphingomyelin phosphodiesterase | - |
| J6L63_RS14255 (J6L63_14205) | - | 2856070..2857107 (-) | 1038 | WP_000857200.1 | site-specific integrase | - |
| J6L63_RS14260 (J6L63_14210) | - | 2857298..2858011 (-) | 714 | WP_001582614.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| J6L63_RS14265 (J6L63_14215) | - | 2858090..2858272 (-) | 183 | WP_000705245.1 | hypothetical protein | - |
| J6L63_RS14270 (J6L63_14220) | - | 2858343..2858528 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| J6L63_RS14275 (J6L63_14225) | - | 2858525..2858671 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| J6L63_RS14280 (J6L63_14230) | - | 2858745..2859599 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| J6L63_RS14285 (J6L63_14235) | - | 2859611..2860327 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| J6L63_RS14290 (J6L63_14240) | - | 2860491..2860733 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| J6L63_RS14295 (J6L63_14245) | - | 2860746..2861189 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| J6L63_RS14300 (J6L63_14250) | - | 2861204..2861344 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| J6L63_RS14305 (J6L63_14255) | - | 2861337..2861546 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| J6L63_RS14310 (J6L63_14260) | - | 2861603..2862352 (+) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| J6L63_RS14315 (J6L63_14265) | - | 2862368..2862565 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| J6L63_RS14320 (J6L63_14270) | - | 2862552..2862932 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| J6L63_RS14325 (J6L63_14275) | - | 2862987..2863310 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| J6L63_RS14330 (J6L63_14280) | - | 2863307..2863468 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| J6L63_RS14335 (J6L63_14285) | - | 2863563..2863865 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| J6L63_RS14340 (J6L63_14290) | - | 2863870..2864130 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| J6L63_RS14345 (J6L63_14295) | - | 2864139..2864402 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| J6L63_RS14350 (J6L63_14300) | - | 2864411..2866354 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| J6L63_RS14355 (J6L63_14305) | - | 2866356..2867276 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| J6L63_RS14360 (J6L63_14310) | - | 2867357..2867974 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| J6L63_RS14365 (J6L63_14315) | ssbA | 2867975..2868445 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| J6L63_RS14370 (J6L63_14320) | - | 2868475..2869368 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| J6L63_RS14375 (J6L63_14325) | - | 2869375..2869593 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| J6L63_RS14380 (J6L63_14330) | - | 2869602..2870006 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| J6L63_RS14385 (J6L63_14335) | - | 2870019..2870390 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| J6L63_RS14390 (J6L63_14340) | - | 2870390..2870647 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| J6L63_RS14395 (J6L63_14345) | - | 2870650..2870892 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| J6L63_RS14400 (J6L63_14350) | - | 2870907..2871152 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| J6L63_RS14405 (J6L63_14355) | - | 2871149..2871685 (+) | 537 | WP_000185693.1 | dUTPase | - |
| J6L63_RS14410 (J6L63_14360) | - | 2871722..2871967 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| J6L63_RS14415 (J6L63_14365) | - | 2871964..2872170 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| J6L63_RS14420 (J6L63_14370) | rinB | 2872167..2872316 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| J6L63_RS14425 (J6L63_14375) | - | 2872316..2872516 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| J6L63_RS14430 (J6L63_14380) | - | 2872544..2872960 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| J6L63_RS14435 (J6L63_14385) | - | 2873192..2873491 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=550608 J6L63_RS14365 WP_000934759.1 2867975..2868445(+) (ssbA) [Staphylococcus aureus strain TCH32929]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=550608 J6L63_RS14365 WP_000934759.1 2867975..2868445(+) (ssbA) [Staphylococcus aureus strain TCH32929]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |