Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | J5M87_RS00635 | Genome accession | NZ_CP072115 |
| Coordinates | 99096..99533 (+) | Length | 145 a.a. |
| NCBI ID | WP_154607860.1 | Uniprot ID | A0A6I4RAZ3 |
| Organism | Streptococcus zhangguiae strain zg-86 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 97172..121543 | 99096..99533 | within | 0 |
Gene organization within MGE regions
Location: 97172..121543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5M87_RS00620 (J5M87_00620) | comGC/cglC | 98145..98459 (+) | 315 | WP_154607862.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| J5M87_RS00625 (J5M87_00625) | comGD/cglD | 98485..98847 (+) | 363 | WP_244315564.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| J5M87_RS00630 (J5M87_00630) | comGE | 98819..99112 (+) | 294 | WP_160463141.1 | competence type IV pilus minor pilin ComGE | - |
| J5M87_RS00635 (J5M87_00635) | comYF | 99096..99533 (+) | 438 | WP_154607860.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| J5M87_RS00640 (J5M87_00640) | comGG | 99544..99969 (+) | 426 | WP_154607859.1 | competence type IV pilus minor pilin ComGG | - |
| J5M87_RS00645 (J5M87_00645) | - | 100330..100782 (-) | 453 | WP_154607858.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| J5M87_RS00650 (J5M87_00650) | - | 100820..100999 (-) | 180 | WP_068993248.1 | type II toxin-antitoxin system HicA family toxin | - |
| J5M87_RS00655 (J5M87_00655) | - | 101183..101590 (-) | 408 | WP_154607857.1 | ArpU family transcriptional regulator | - |
| J5M87_RS00660 (J5M87_00660) | - | 102017..102502 (-) | 486 | WP_154607856.1 | hypothetical protein | - |
| J5M87_RS09770 | - | 102595..103116 (-) | 522 | WP_230082343.1 | hypothetical protein | - |
| J5M87_RS00670 (J5M87_00670) | - | 103129..103377 (-) | 249 | WP_154607855.1 | hypothetical protein | - |
| J5M87_RS00675 (J5M87_00675) | - | 103480..104277 (-) | 798 | WP_154607854.1 | DnaD domain-containing protein | - |
| J5M87_RS00680 (J5M87_00680) | - | 104431..104712 (-) | 282 | WP_154607853.1 | hypothetical protein | - |
| J5M87_RS00685 (J5M87_00685) | - | 104714..105049 (-) | 336 | WP_154607852.1 | DNA-binding protein | - |
| J5M87_RS00690 (J5M87_00690) | - | 105059..105253 (-) | 195 | WP_154607851.1 | hypothetical protein | - |
| J5M87_RS00695 (J5M87_00695) | - | 105247..105402 (-) | 156 | WP_154607850.1 | hypothetical protein | - |
| J5M87_RS00700 (J5M87_00700) | - | 105399..105722 (-) | 324 | WP_154607849.1 | hypothetical protein | - |
| J5M87_RS00705 (J5M87_00705) | - | 105942..106571 (-) | 630 | WP_154607848.1 | Rha family transcriptional regulator | - |
| J5M87_RS09775 | - | 106589..106717 (-) | 129 | WP_348271964.1 | helix-turn-helix transcriptional regulator | - |
| J5M87_RS00715 (J5M87_00715) | - | 106955..107614 (+) | 660 | WP_154607847.1 | helix-turn-helix transcriptional regulator | - |
| J5M87_RS00720 (J5M87_00720) | dinD | 107864..108718 (+) | 855 | WP_154607846.1 | DNA damage-inducible protein D | - |
| J5M87_RS00725 (J5M87_00725) | - | 108895..110043 (+) | 1149 | WP_154607845.1 | site-specific integrase | - |
| J5M87_RS00730 (J5M87_00730) | comYH | 110143..111096 (+) | 954 | WP_154607844.1 | class I SAM-dependent methyltransferase | Machinery gene |
| J5M87_RS00735 (J5M87_00735) | - | 111146..112336 (+) | 1191 | WP_154607843.1 | acetate kinase | - |
| J5M87_RS00740 (J5M87_00740) | - | 112612..113472 (+) | 861 | WP_154607842.1 | pyridoxamine kinase | - |
| J5M87_RS00745 (J5M87_00745) | - | 113469..113996 (+) | 528 | WP_154607841.1 | ECF transporter S component | - |
| J5M87_RS00750 (J5M87_00750) | - | 114226..114780 (+) | 555 | WP_154607840.1 | folate family ECF transporter S component | - |
| J5M87_RS00755 (J5M87_00755) | - | 114841..116097 (+) | 1257 | WP_154607839.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| J5M87_RS00760 (J5M87_00760) | pepA | 116632..117705 (-) | 1074 | WP_154607838.1 | glutamyl aminopeptidase | - |
| J5M87_RS00765 (J5M87_00765) | - | 117757..118041 (+) | 285 | WP_154607837.1 | DUF4651 domain-containing protein | - |
| J5M87_RS00770 (J5M87_00770) | - | 118038..118358 (+) | 321 | WP_154607836.1 | thioredoxin family protein | - |
| J5M87_RS00775 (J5M87_00775) | ytpR | 118362..118994 (+) | 633 | WP_154607835.1 | YtpR family tRNA-binding protein | - |
| J5M87_RS00780 (J5M87_00780) | ssbB | 119059..119454 (+) | 396 | WP_154607834.1 | single-stranded DNA-binding protein | Machinery gene |
| J5M87_RS00785 (J5M87_00785) | groES | 119620..119904 (+) | 285 | WP_154607833.1 | co-chaperone GroES | - |
| J5M87_RS00790 (J5M87_00790) | groL | 119921..121543 (+) | 1623 | WP_154607832.1 | chaperonin GroEL | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16967.62 Da Isoelectric Point: 8.7813
>NTDB_id=550516 J5M87_RS00635 WP_154607860.1 99096..99533(+) (comYF) [Streptococcus zhangguiae strain zg-86]
MWKKSKVSAFTLLECLVALLVLSGSLLVFEGLTKLIHHELIYQETGLEKKWLVFADQLRYEFEGVRLVKVENNRLYVDKL
GQQLSFGKSKSDDFRKTNDKGQGYQPMLYQVASVAIHQERDIVQIDITFDNGWERSFVYRFKEKV
MWKKSKVSAFTLLECLVALLVLSGSLLVFEGLTKLIHHELIYQETGLEKKWLVFADQLRYEFEGVRLVKVENNRLYVDKL
GQQLSFGKSKSDDFRKTNDKGQGYQPMLYQVASVAIHQERDIVQIDITFDNGWERSFVYRFKEKV
Nucleotide
Download Length: 438 bp
>NTDB_id=550516 J5M87_RS00635 WP_154607860.1 99096..99533(+) (comYF) [Streptococcus zhangguiae strain zg-86]
ATGTGGAAAAAGAGTAAAGTGTCTGCCTTTACTCTCTTAGAATGCCTAGTGGCTTTGCTTGTTTTGTCAGGAAGTTTACT
GGTTTTTGAGGGATTGACTAAGCTGATACATCATGAGTTGATTTATCAAGAAACAGGTTTAGAAAAAAAGTGGCTGGTTT
TTGCAGATCAATTGCGCTATGAGTTTGAGGGAGTTCGTTTGGTTAAGGTGGAAAACAATCGCCTGTATGTTGATAAATTA
GGGCAGCAACTATCCTTTGGCAAATCAAAATCAGATGATTTTCGAAAAACCAATGATAAAGGCCAAGGCTATCAGCCGAT
GCTATATCAGGTTGCCTCTGTCGCTATTCACCAAGAACGAGACATAGTTCAGATTGATATTACTTTTGACAATGGTTGGG
AGAGAAGTTTTGTTTATCGTTTTAAAGAAAAAGTGTAG
ATGTGGAAAAAGAGTAAAGTGTCTGCCTTTACTCTCTTAGAATGCCTAGTGGCTTTGCTTGTTTTGTCAGGAAGTTTACT
GGTTTTTGAGGGATTGACTAAGCTGATACATCATGAGTTGATTTATCAAGAAACAGGTTTAGAAAAAAAGTGGCTGGTTT
TTGCAGATCAATTGCGCTATGAGTTTGAGGGAGTTCGTTTGGTTAAGGTGGAAAACAATCGCCTGTATGTTGATAAATTA
GGGCAGCAACTATCCTTTGGCAAATCAAAATCAGATGATTTTCGAAAAACCAATGATAAAGGCCAAGGCTATCAGCCGAT
GCTATATCAGGTTGCCTCTGTCGCTATTCACCAAGAACGAGACATAGTTCAGATTGATATTACTTTTGACAATGGTTGGG
AGAGAAGTTTTGTTTATCGTTTTAAAGAAAAAGTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.482 |
97.241 |
0.51 |
| comYF | Streptococcus mutans UA159 |
51.773 |
97.241 |
0.503 |
| comGF/cglF | Streptococcus pneumoniae R6 |
49.65 |
98.621 |
0.49 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
49.65 |
98.621 |
0.49 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
49.65 |
98.621 |
0.49 |
| comGF/cglF | Streptococcus pneumoniae D39 |
49.65 |
98.621 |
0.49 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
50 |
96.552 |
0.483 |
| comGF/cglF | Streptococcus mitis SK321 |
47.101 |
95.172 |
0.448 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
47.101 |
95.172 |
0.448 |