Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J5V93_RS25900 Genome accession   NZ_CP072061
Coordinates   5067767..5068288 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5062767..5073288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS25880 (J5V93_25880) rplI 5063977..5064423 (-) 447 WP_002130186.1 50S ribosomal protein L9 -
  J5V93_RS25885 (J5V93_25885) - 5064420..5066393 (-) 1974 WP_002016460.1 DHH family phosphoesterase -
  J5V93_RS25890 (J5V93_25890) - 5066472..5067407 (-) 936 WP_002130187.1 YybS family protein -
  J5V93_RS25895 (J5V93_25895) rpsR 5067489..5067722 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  J5V93_RS25900 (J5V93_25900) ssbA 5067767..5068288 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  J5V93_RS25905 (J5V93_25905) rpsF 5068315..5068605 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  J5V93_RS25910 (J5V93_25910) ychF 5068797..5069897 (-) 1101 WP_215563868.1 redox-regulated ATPase YchF -
  J5V93_RS25915 (J5V93_25915) - 5070013..5070210 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  J5V93_RS25920 (J5V93_25920) - 5070231..5071088 (-) 858 WP_002016466.1 mechanosensitive ion channel family protein -
  J5V93_RS25925 (J5V93_25925) yyaC 5071349..5071945 (+) 597 WP_002130189.1 spore protease YyaC -
  J5V93_RS25930 (J5V93_25930) spo0J 5071966..5072817 (-) 852 WP_170935246.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=550356 J5V93_RS25900 WP_000981963.1 5067767..5068288(-) (ssbA) [Bacillus mycoides strain JAS06/1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=550356 J5V93_RS25900 WP_000981963.1 5067767..5068288(-) (ssbA) [Bacillus mycoides strain JAS06/1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382