Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LSG45_RS02215 Genome accession   NZ_CP089238
Coordinates   463716..464123 (+) Length   135 a.a.
NCBI ID   WP_096834138.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 458716..469123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS02185 (LSG45_02185) - 458764..459768 (-) 1005 WP_003084569.1 aspartate carbamoyltransferase catalytic subunit -
  LSG45_RS02190 (LSG45_02190) pyrR 459792..460304 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LSG45_RS02195 (LSG45_02195) ruvX 460416..460850 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  LSG45_RS02200 (LSG45_02200) - 460850..461419 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  LSG45_RS02205 (LSG45_02205) - 461468..462361 (-) 894 WP_003084580.1 TonB family protein -
  LSG45_RS02210 (LSG45_02210) gshB 462508..463461 (-) 954 WP_003100943.1 glutathione synthase -
  LSG45_RS02215 (LSG45_02215) pilG 463716..464123 (+) 408 WP_096834138.1 twitching motility response regulator PilG Regulator
  LSG45_RS02220 (LSG45_02220) pilH 464170..464535 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSG45_RS02225 (LSG45_02225) - 464586..465122 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LSG45_RS02230 (LSG45_02230) pilJ 465207..467255 (+) 2049 WP_234575373.1 chemotaxis chemoreceptor PilJ -
  LSG45_RS02235 (LSG45_02235) pilK 467316..468191 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14790.18 Da        Isoelectric Point: 6.4614

>NTDB_id=549762 LSG45_RS02215 WP_096834138.1 463716..464123(+) (pilG) [Pseudomonas aeruginosa strain JNQH-PA033]
MEQQSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKERIVGSDQYLTKPFSKEELLGAIKAHVPSFTPVDAVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=549762 LSG45_RS02215 WP_096834138.1 463716..464123(+) (pilG) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGGAACAGCAATCCGACGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACACTGCT
GAAAAAGGTCGGTTGCGACGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCGAAGATCGCCGATACCCATCCGAACA
TCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCGTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGAGCGCATCGTCGGCTCCGACCAGTA
CCTCACCAAGCCGTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCACACGTACCCAGCTTCACCCCGGTGGACGCCG
TTTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.016

94.074

0.696
  vicR Streptococcus mutans UA159

43.59

86.667

0.378
  chpA Acinetobacter baumannii strain A118

37.692

96.296

0.363