Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSG45_RS02220 Genome accession   NZ_CP089238
Coordinates   464170..464535 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459170..469535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS02190 (LSG45_02190) pyrR 459792..460304 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LSG45_RS02195 (LSG45_02195) ruvX 460416..460850 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  LSG45_RS02200 (LSG45_02200) - 460850..461419 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  LSG45_RS02205 (LSG45_02205) - 461468..462361 (-) 894 WP_003084580.1 TonB family protein -
  LSG45_RS02210 (LSG45_02210) gshB 462508..463461 (-) 954 WP_003100943.1 glutathione synthase -
  LSG45_RS02215 (LSG45_02215) pilG 463716..464123 (+) 408 WP_096834138.1 twitching motility response regulator PilG Regulator
  LSG45_RS02220 (LSG45_02220) pilH 464170..464535 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSG45_RS02225 (LSG45_02225) - 464586..465122 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LSG45_RS02230 (LSG45_02230) pilJ 465207..467255 (+) 2049 WP_234575373.1 chemotaxis chemoreceptor PilJ -
  LSG45_RS02235 (LSG45_02235) pilK 467316..468191 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=549763 LSG45_RS02220 WP_003084587.1 464170..464535(+) (pilH) [Pseudomonas aeruginosa strain JNQH-PA033]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=549763 LSG45_RS02220 WP_003084587.1 464170..464535(+) (pilH) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGACAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364